Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H0511_RS06725 Genome accession   NZ_LR822017
Coordinates   1319593..1321569 (-) Length   658 a.a.
NCBI ID   WP_179973881.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314593..1326569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS06705 (STHERMO_1502) amiF 1315091..1316020 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0511_RS06710 (STHERMO_1503) amiE 1316013..1317098 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  H0511_RS06715 (STHERMO_1504) amiD 1317108..1318034 (-) 927 WP_179973880.1 oligopeptide ABC transporter permease OppC Regulator
  H0511_RS06720 (STHERMO_1505) amiC 1318034..1319527 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H0511_RS06725 (STHERMO_1506) amiA3 1319593..1321569 (-) 1977 WP_179973881.1 peptide ABC transporter substrate-binding protein Regulator
  H0511_RS06730 (STHERMO_1507) - 1321804..1321996 (-) 193 Protein_1291 IS3 family transposase -
  H0511_RS10475 (STHERMO_1509) - 1321990..1322414 (-) 425 Protein_1292 ATP-binding cassette domain-containing protein -
  H0511_RS10480 - 1322454..1322903 (-) 450 Protein_1293 TatD family hydrolase -
  H0511_RS06745 (STHERMO_1511) - 1323215..1324420 (+) 1206 WP_179973883.1 OFA family MFS transporter -
  H0511_RS06750 - 1324469..1325586 (-) 1118 Protein_1295 IS3 family transposase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72353.57 Da        Isoelectric Point: 5.8920

>NTDB_id=1130980 H0511_RS06725 WP_179973881.1 1319593..1321569(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_336]
MKKSKWLALAGVALLGVGVLTACSSKSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPS
VAEDWSVSKDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVG
VKAIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWD
KKNVHFDAIKLSYYDGSDQDALVRGFTDGAYNIARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINIDRQSYKYTAK
KTDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLGVRNLFVPSDFVSAGDKTFGDLVTNKMSSYGDEWSGV
NFADSQDGLYNAEKAKTEFAKAKDALKADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDL
QNATLNAANAAAEDWDISNGVIWAPDYQDPSTYLDIFKTTSSENTKTLMGYDDPNNAAAVQVGLKDYDALLNSAASETSD
LNVRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLK
EKKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1130980 H0511_RS06725 WP_179973881.1 1319593..1321569(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAACGGCTTGTTCATCTAAATC
TAAATCAAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATA
CGGGACCTACAAAAACTGCTGTGACAAATGGCGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCA
GTAGCTGAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGGTCAAATGGTATACTTC
TGATGGTGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGACTCCAAAGCAGGTG
GTATCTATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGT
GTCAAGGCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAG
TTTGCTTTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCC
TTTATAATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGAC
AAGAAAAATGTACACTTTGATGCTATCAAATTATCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCAC
TGATGGTGCTTATAATATTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATA
TTTATTACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAA
AAGACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGA
CCGTAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGGTGTTCGTAACCTCTTTGTGCCTTCTGATT
TTGTGAGTGCAGGTGATAAGACCTTCGGAGATCTTGTAACGAATAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTG
AATTTTGCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCAA
AGCAGATGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAAT
CTTTGAAACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTG
CAAAATGCAACCCTTAATGCCGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGGCGCCAGATTA
CCAAGATCCATCAACCTATCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGACTCTCATGGGTTATGATGATC
CAAATAATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGAC
CTTAATGTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGG
TAATGGTGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAG
ACTACTTAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAA
GAAAAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

95.903

100

0.96
  amiA3 Streptococcus thermophilus LMG 18311

95.751

100

0.959
  amiA Streptococcus salivarius strain HSISS4

90.729

100

0.907

Multiple sequence alignment