Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H0511_RS06710 Genome accession   NZ_LR822017
Coordinates   1316013..1317098 (-) Length   361 a.a.
NCBI ID   WP_179970968.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311013..1322098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS06680 (STHERMO_1497) - 1311378..1312193 (-) 816 WP_179973876.1 Cof-type HAD-IIB family hydrolase -
  H0511_RS06685 (STHERMO_1498) - 1312186..1312980 (-) 795 WP_179973877.1 HAD-IIB family hydrolase -
  H0511_RS06690 (STHERMO_1499) - 1313164..1313541 (+) 378 WP_179973878.1 GntR family transcriptional regulator -
  H0511_RS06695 (STHERMO_1500) - 1313546..1314244 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H0511_RS06700 (STHERMO_1501) - 1314256..1315041 (+) 786 WP_179973879.1 ABC transporter permease -
  H0511_RS06705 (STHERMO_1502) amiF 1315091..1316020 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0511_RS06710 (STHERMO_1503) amiE 1316013..1317098 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  H0511_RS06715 (STHERMO_1504) amiD 1317108..1318034 (-) 927 WP_179973880.1 oligopeptide ABC transporter permease OppC Regulator
  H0511_RS06720 (STHERMO_1505) amiC 1318034..1319527 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H0511_RS06725 (STHERMO_1506) amiA3 1319593..1321569 (-) 1977 WP_179973881.1 peptide ABC transporter substrate-binding protein Regulator
  H0511_RS06730 (STHERMO_1507) - 1321804..1321996 (-) 193 Protein_1291 IS3 family transposase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39878.69 Da        Isoelectric Point: 4.8090

>NTDB_id=1130977 H0511_RS06710 WP_179970968.1 1316013..1317098(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_336]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHQDWAAIRGAKIATIFQDPMTSLNPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKILANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1130977 H0511_RS06710 WP_179970968.1 1316013..1317098(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCTCTTGATTTAGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGAAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGTCGTGTAGCTAGCGGATCTATCGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACCAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCAATGACCAG
TCTTAACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGAAAAACAGCCAAGGAAGCTA
AAAAAATGGCAATTGATTACATGGACAAGGTTGGTATTCCAGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGCGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGTCTGCCACAATTGGC
TGATGATAAGGGGAAACTCTTCTCAATTCCAGGGACGCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCTAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

99.723

100

0.997
  amiE Streptococcus thermophilus LMD-9

99.723

100

0.997
  amiE Streptococcus salivarius strain HSISS4

97.23

100

0.972
  oppD Streptococcus mutans UA159

54.441

96.676

0.526

Multiple sequence alignment