Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0511_RS06705 Genome accession   NZ_LR822017
Coordinates   1315091..1316020 (-) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310091..1321020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS06680 (STHERMO_1497) - 1311378..1312193 (-) 816 WP_179973876.1 Cof-type HAD-IIB family hydrolase -
  H0511_RS06685 (STHERMO_1498) - 1312186..1312980 (-) 795 WP_179973877.1 HAD-IIB family hydrolase -
  H0511_RS06690 (STHERMO_1499) - 1313164..1313541 (+) 378 WP_179973878.1 GntR family transcriptional regulator -
  H0511_RS06695 (STHERMO_1500) - 1313546..1314244 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H0511_RS06700 (STHERMO_1501) - 1314256..1315041 (+) 786 WP_179973879.1 ABC transporter permease -
  H0511_RS06705 (STHERMO_1502) amiF 1315091..1316020 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0511_RS06710 (STHERMO_1503) amiE 1316013..1317098 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  H0511_RS06715 (STHERMO_1504) amiD 1317108..1318034 (-) 927 WP_179973880.1 oligopeptide ABC transporter permease OppC Regulator
  H0511_RS06720 (STHERMO_1505) amiC 1318034..1319527 (-) 1494 WP_164135541.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=1130976 H0511_RS06705 WP_002951426.1 1315091..1316020(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_336]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1130976 H0511_RS06705 WP_002951426.1 1315091..1316020(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCATGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7CIU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment