Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0511_RS06720 Genome accession   NZ_LR822017
Coordinates   1318034..1319527 (-) Length   497 a.a.
NCBI ID   WP_164135541.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313034..1324527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS06690 (STHERMO_1499) - 1313164..1313541 (+) 378 WP_179973878.1 GntR family transcriptional regulator -
  H0511_RS06695 (STHERMO_1500) - 1313546..1314244 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H0511_RS06700 (STHERMO_1501) - 1314256..1315041 (+) 786 WP_179973879.1 ABC transporter permease -
  H0511_RS06705 (STHERMO_1502) amiF 1315091..1316020 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0511_RS06710 (STHERMO_1503) amiE 1316013..1317098 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  H0511_RS06715 (STHERMO_1504) amiD 1317108..1318034 (-) 927 WP_179973880.1 oligopeptide ABC transporter permease OppC Regulator
  H0511_RS06720 (STHERMO_1505) amiC 1318034..1319527 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H0511_RS06725 (STHERMO_1506) amiA3 1319593..1321569 (-) 1977 WP_179973881.1 peptide ABC transporter substrate-binding protein Regulator
  H0511_RS06730 (STHERMO_1507) - 1321804..1321996 (-) 193 Protein_1291 IS3 family transposase -
  H0511_RS10475 (STHERMO_1509) - 1321990..1322414 (-) 425 Protein_1292 ATP-binding cassette domain-containing protein -
  H0511_RS10480 - 1322454..1322903 (-) 450 Protein_1293 TatD family hydrolase -
  H0511_RS06745 (STHERMO_1511) - 1323215..1324420 (+) 1206 WP_179973883.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55816.60 Da        Isoelectric Point: 10.0391

>NTDB_id=1130979 H0511_RS06720 WP_164135541.1 1318034..1319527(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_336]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKRISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKNRYQDPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGIL
TFLLSLPTIALVYIIRLMGSAIGLPDSFPILGAGDWRSYVLPSVILGILSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1130979 H0511_RS06720 WP_164135541.1 1318034..1319527(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAAAGATACATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACAGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGAACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAGAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCCAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAATCGTTATCAGGACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGTATCCTG
ACTTTCTTGCTCTCTCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATGGGTTCTGCGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCTTATGTCTTGCCATCTGTTATTCTCGGAATCTTGTCAACTCCTGGTC
TTGCGATTTGGATCCGCCGTTACATGATTGATTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGATTGTCA
GAACAAGAAATTTCAAACAAGCACATTTTCAAGAATGCTATGGTTTCCTTGGTTTCAGGAATTCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGTCTGGTATTTATTTTTACAGCCCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

95.171

100

0.952
  amiC Streptococcus thermophilus LMD-9

94.97

100

0.95
  amiC Streptococcus thermophilus LMG 18311

94.97

100

0.95

Multiple sequence alignment