Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GPW68_RS07890 Genome accession   NZ_LR738723
Coordinates   1581663..1582253 (-) Length   196 a.a.
NCBI ID   WP_074389118.1    Uniprot ID   A0AAP6DUB6
Organism   Streptococcus suis isolate GD-0088     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576663..1587253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS07865 - 1577170..1577934 (-) 765 WP_002937291.1 ABC transporter ATP-binding protein -
  GPW68_RS07870 - 1577934..1578881 (-) 948 WP_002937293.1 branched-chain amino acid ABC transporter permease -
  GPW68_RS07875 - 1578884..1579771 (-) 888 WP_012027482.1 branched-chain amino acid ABC transporter permease -
  GPW68_RS07880 - 1579972..1581141 (-) 1170 WP_074389116.1 ABC transporter substrate-binding protein -
  GPW68_RS07885 - 1581280..1581546 (-) 267 WP_074389117.1 DUF2129 domain-containing protein -
  GPW68_RS07890 clpP 1581663..1582253 (-) 591 WP_074389118.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GPW68_RS07895 upp 1582380..1583009 (-) 630 WP_074389119.1 uracil phosphoribosyltransferase -
  GPW68_RS07900 - 1583092..1584708 (-) 1617 WP_074389120.1 glycoside hydrolase family 13 protein -
  GPW68_RS07905 gtfA 1584781..1586229 (-) 1449 WP_024410943.1 sucrose phosphorylase -
  GPW68_RS07910 - 1586299..1587129 (-) 831 WP_074389121.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21480.71 Da        Isoelectric Point: 5.7110

>NTDB_id=1129559 GPW68_RS07890 WP_074389118.1 1581663..1582253(-) (clpP) [Streptococcus suis isolate GD-0088]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
TVKQIHKDAERDYWMTAEETLAYGFIDQIMDNTKAK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1129559 GPW68_RS07890 WP_074389118.1 1581663..1582253(-) (clpP) [Streptococcus suis isolate GD-0088]
ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAACGTTCTTATGATATTTATTCACGCCTATTGAAAGATCGTAT
TATCATGCTGACAGGACCAGTTGAGGATAATATGGCAAATTCAATCATTGCCCAGTTGCTTTTCCTTGATGCCCAAGACC
CAACCAAAGATATTTACCTTTATGTAAATACACCTGGTGGATCTGTGTCAGCTGGTCTAGCTATTGTAGATACCATGAAC
TTTATCAAGGCTGATGTGCAAACCATCGTAATGGGGACAGCTGCCAGCATGGGTACAATTATCGCTTCAAGCGGTGCCAA
GGGCAAACGTTTCATGTTGCCAAATGCAGAATACATGATTCACCAGCCAATGGGTGGAACTGGTGGCGGTACACAGCAAA
CGGATATGGCCATTGCAGCGGAACACTTGCTTAAAACCCGTAACAAATTAGAAAAAATCTTGGCTGATAATTCAGGTAAA
ACTGTGAAACAAATCCACAAGGATGCAGAACGCGATTACTGGATGACAGCTGAAGAAACATTAGCTTACGGATTTATTGA
CCAAATTATGGACAATACGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

91.837

100

0.918
  clpP Streptococcus pyogenes MGAS315

91.837

100

0.918
  clpP Streptococcus mutans UA159

90.306

100

0.903
  clpP Streptococcus pneumoniae R6

90.104

97.959

0.883
  clpP Streptococcus pneumoniae Rx1

90.104

97.959

0.883
  clpP Streptococcus pneumoniae D39

90.104

97.959

0.883
  clpP Streptococcus pneumoniae TIGR4

90.104

97.959

0.883
  clpP Streptococcus thermophilus LMG 18311

88.265

100

0.883
  clpP Streptococcus thermophilus LMD-9

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.184

100

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

83.673

100

0.837
  clpP Bacillus subtilis subsp. subtilis str. 168

57.653

100

0.577
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571

Multiple sequence alignment