Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FQT45_RS03695 Genome accession   NZ_LR595858
Coordinates   743141..743851 (+) Length   236 a.a.
NCBI ID   WP_007893534.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 738141..748851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS03670 (NCTC10228_00745) - 738545..739564 (+) 1020 WP_077323105.1 DUF3114 domain-containing protein -
  FQT45_RS03675 (NCTC10228_00746) - 739887..740534 (-) 648 WP_077323106.1 amino acid ABC transporter permease -
  FQT45_RS03680 (NCTC10228_00747) - 740550..741254 (-) 705 WP_077323107.1 amino acid ABC transporter permease -
  FQT45_RS03685 (NCTC10228_00748) - 741272..742090 (-) 819 WP_077323108.1 transporter substrate-binding domain-containing protein -
  FQT45_RS03690 (NCTC10228_00749) - 742103..742882 (-) 780 WP_007893520.1 amino acid ABC transporter ATP-binding protein -
  FQT45_RS03695 (NCTC10228_00750) vicR 743141..743851 (+) 711 WP_007893534.1 response regulator YycF Regulator
  FQT45_RS03700 (NCTC10228_00751) vicK 743844..745202 (+) 1359 WP_077323109.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FQT45_RS03705 (NCTC10228_00752) vicX 745203..746015 (+) 813 WP_007893495.1 MBL fold metallo-hydrolase Regulator
  FQT45_RS03710 (NCTC10228_00753) rnc 746121..746813 (+) 693 WP_077323110.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27041.97 Da        Isoelectric Point: 5.1078

>NTDB_id=1128479 FQT45_RS03695 WP_007893534.1 743141..743851(+) (vicR) [Streptococcus pseudoporcinus strain NCTC10228]
MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQHD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1128479 FQT45_RS03695 WP_007893534.1 743141..743851(+) (vicR) [Streptococcus pseudoporcinus strain NCTC10228]
ATGAAAAAAATCCTCATTGTAGACGATGAAAAACCTATTTCAGACATTATAAAGTTTAATTTGACCAAAGAAGGTTATGA
TATCATGACAGCTTTTGATGGTCGAGAAGCCATCGCAGCCTTTGAAGAAGGTAAACCTGATTTAGTTATTTTGGATTTGA
TGTTACCAGAGATGGATGGTCTTGAAGTTGCAAAAGAAATTCGAAAAACCAGTCACATCCCTATTATTATGCTTTCTGCC
AAAGATAGTGAATTTGATAAGGTCATTGGCTTAGAGATTGGTGCGGACGATTATGTAACAAAACCTTTTTCAAATCGTGA
GCTCCTAGCGCGTGTTAAAGCTCATTTGCGACGCACCGAAACGATTGAAACAGCTGTTGCTGAAGAAAATGCTTCCTCAG
GAAACCAAGAATTAACTATCGGTAACCTCCAGATTCTGCCAGATGCTTTCTTGGCTAAAAAATATGGTAAGGAAGTTGAA
TTGACACATCGCGAATTTGAATTATTACACCATTTAGCTAATCATATCGGGCAAGTCATGACCCGTGAACATTTATTAGA
AACGGTCTGGGGCTATGATTATTTTGGTGATGTGAGAACTGTTGATGTTACCGTACGTCGTTTGAGAGAAAAAATTGAAG
ATACCCCAAGCCGTCCTGAATATATTTTGACAAGACGTGGCGTTGGCTATTATATGAAACAGCATGACTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

87.712

100

0.877
  micA Streptococcus pneumoniae Cp1015

77.447

99.576

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.777

98.729

0.432
  covR Streptococcus salivarius strain HSISS4

42.735

99.153

0.424
  scnR Streptococcus mutans UA159

37.768

98.729

0.373

Multiple sequence alignment