Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | E5CHR_RS29135 | Genome accession | NZ_LR594675 |
| Coordinates | 6124288..6124785 (+) | Length | 165 a.a. |
| NCBI ID | WP_174255763.1 | Uniprot ID | A0A6P2FQJ4 |
| Organism | Variovorax sp. PBS-H4 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 6119288..6129785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5CHR_RS29115 (H4CHR_05816) | - | 6119417..6120226 (+) | 810 | WP_162583241.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| E5CHR_RS29120 (H4CHR_05817) | - | 6120291..6120941 (+) | 651 | WP_162583242.1 | FHA domain-containing protein | - |
| E5CHR_RS29125 (H4CHR_05818) | - | 6120981..6123254 (+) | 2274 | WP_162583243.1 | adenylate/guanylate cyclase domain-containing protein | - |
| E5CHR_RS29130 (H4CHR_05819) | - | 6123281..6124090 (+) | 810 | WP_162583244.1 | 3',5'-cyclic-nucleotide phosphodiesterase | - |
| E5CHR_RS29135 (H4CHR_05820) | pilA | 6124288..6124785 (+) | 498 | WP_174255763.1 | pilin | Machinery gene |
| E5CHR_RS29140 (H4CHR_05821) | - | 6125104..6129279 (-) | 4176 | WP_162583245.1 | PilC/PilY family type IV pilus protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 16775.10 Da Isoelectric Point: 9.0004
>NTDB_id=1128257 E5CHR_RS29135 WP_174255763.1 6124288..6124785(+) (pilA) [Variovorax sp. PBS-H4]
MNRAIRSAQRGFTLIELMIVVAIIGILAAVALPAYQDYVKRAKVTEGLSLASSAKTTIAENAANGKKYDAGWTAPSATAA
VKSVAIDNTTGAVTITFDKPVEDGKTLILRPFTGPNTTPVALPDSSSGTYDAPTGNIAWACGAAGAGAPATAGTLDAKYA
PSSCR
MNRAIRSAQRGFTLIELMIVVAIIGILAAVALPAYQDYVKRAKVTEGLSLASSAKTTIAENAANGKKYDAGWTAPSATAA
VKSVAIDNTTGAVTITFDKPVEDGKTLILRPFTGPNTTPVALPDSSSGTYDAPTGNIAWACGAAGAGAPATAGTLDAKYA
PSSCR
Nucleotide
Download Length: 498 bp
>NTDB_id=1128257 E5CHR_RS29135 WP_174255763.1 6124288..6124785(+) (pilA) [Variovorax sp. PBS-H4]
ATGAACCGTGCTATCCGTTCCGCTCAACGCGGCTTTACCCTCATCGAACTCATGATCGTCGTGGCGATCATTGGTATCTT
GGCCGCTGTGGCGCTGCCTGCCTACCAGGACTACGTCAAGCGAGCCAAGGTCACCGAAGGCCTGTCGCTCGCATCGTCGG
CCAAGACCACCATCGCCGAGAACGCCGCGAACGGCAAGAAATACGATGCCGGCTGGACGGCCCCGTCGGCGACCGCTGCC
GTGAAATCTGTAGCCATCGACAACACCACTGGCGCCGTGACCATCACCTTCGACAAGCCAGTGGAAGATGGTAAGACCTT
GATTCTTCGCCCGTTCACTGGCCCGAATACCACTCCGGTCGCGCTGCCGGACTCCAGCTCTGGCACATATGACGCTCCCA
CCGGCAACATCGCTTGGGCTTGCGGCGCTGCTGGTGCCGGCGCCCCCGCAACTGCAGGCACGCTGGATGCGAAGTACGCA
CCCTCTAGCTGCCGCTAA
ATGAACCGTGCTATCCGTTCCGCTCAACGCGGCTTTACCCTCATCGAACTCATGATCGTCGTGGCGATCATTGGTATCTT
GGCCGCTGTGGCGCTGCCTGCCTACCAGGACTACGTCAAGCGAGCCAAGGTCACCGAAGGCCTGTCGCTCGCATCGTCGG
CCAAGACCACCATCGCCGAGAACGCCGCGAACGGCAAGAAATACGATGCCGGCTGGACGGCCCCGTCGGCGACCGCTGCC
GTGAAATCTGTAGCCATCGACAACACCACTGGCGCCGTGACCATCACCTTCGACAAGCCAGTGGAAGATGGTAAGACCTT
GATTCTTCGCCCGTTCACTGGCCCGAATACCACTCCGGTCGCGCTGCCGGACTCCAGCTCTGGCACATATGACGCTCCCA
CCGGCAACATCGCTTGGGCTTGCGGCGCTGCTGGTGCCGGCGCCCCCGCAACTGCAGGCACGCTGGATGCGAAGTACGCA
CCCTCTAGCTGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
46.857 |
100 |
0.497 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37.688 |
100 |
0.455 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
45.062 |
98.182 |
0.442 |
| pilA2 | Legionella pneumophila str. Paris |
44.444 |
98.182 |
0.436 |
| comP | Acinetobacter baylyi ADP1 |
39.08 |
100 |
0.412 |
| pilE | Neisseria gonorrhoeae MS11 |
36.905 |
100 |
0.376 |
| pilA/pilA1 | Eikenella corrodens VA1 |
33.88 |
100 |
0.376 |