Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL23_RS08470 Genome accession   NZ_LR594049
Coordinates   1761272..1763254 (-) Length   660 a.a.
NCBI ID   WP_061603317.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756272..1768254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08455 (NCTC10231_01687) amiD 1756515..1757441 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  FGL23_RS08460 (NCTC10231_01688) amiC 1757441..1758937 (-) 1497 WP_045634046.1 ABC transporter permease Regulator
  FGL23_RS08465 (NCTC10231_01689) amiA 1759002..1760993 (-) 1992 WP_045634047.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08470 (NCTC10231_01690) amiA 1761272..1763254 (-) 1983 WP_061603317.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08475 (NCTC10231_01691) amiA3 1763505..1765463 (-) 1959 WP_061603318.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08480 (NCTC10231_01692) amiA 1765676..1767637 (-) 1962 WP_061603319.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73536.98 Da        Isoelectric Point: 5.0837

>NTDB_id=1127984 FGL23_RS08470 WP_061603317.1 1761272..1763254(-) (amiA) [Streptococcus gordonii strain NCTC10231]
MKKRNVLAMAGVTLLAVGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSSKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKGITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDAQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSIRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPTIQTNTLIVKRAQSLKQSIEKSLGTDNVVVDIQMLSQED
VNNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMEEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILIPSTSNGGGAGVTRVVPFTAAFGWTGNKSDGAFLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1127984 FGL23_RS08470 WP_061603317.1 1761272..1763254(-) (amiA) [Streptococcus gordonii strain NCTC10231]
ATGAAAAAACGTAATGTTTTAGCCATGGCTGGTGTTACTTTACTTGCTGTTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGATCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTGTCAA
GTAAGACCTCTACCCACGAGATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCTCTTGCAGAAGACTGGAGTGTATCTAAGGACGGCTTGACTTACACTTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAGTCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCAACAGTA
GGGATTAAAGCTGTCGATGATCATACCTTGCAGTTCACTTTGGAACACCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTCCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGAGACAAATTTGGTCAAGCTACTGACCCGACAAGTA
TCCTTTATAATGGTCCTTTCTTGTTGAAAGGTATAACTTCGAAGTCCTCTATTGAGTTTGCGAAAAATCAGAACTATTGG
GATAAGGATAATGTCCATGTCGACAATGTTAAATTAGCTTTCTATGATGGGCAAGACCAAGAATCCTTAATTCGTGGCTT
TAAAGACGGCTCTTATAGTAAGGCACGTGTTTATCCTCGTAGTTCAAACTATGCGTCTGTAGAGAAAGAATATAAAGACA
ATATTATCTTTAGTCCTCAAGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTATAATCATACTTCT
AAAACGACAGATGCACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGACTTCCGTCAGGCTTTGAACTTTGCTTA
TGACCGTAAGGCCTATTCTGACCAAGTGAACGGTGAAGAAGGAGCCCTTAAATCTATTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGACAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCAAAAGCAGAATTCGCCAAAGCAAAAGAAGCCCT
TCAAGCAGAAGGCGTGGAATTCCCAATTCATCTGGACATACCAACAATCCAGACCAATACTCTTATTGTAAAACGGGCTC
AATCTTTGAAACAGTCTATTGAAAAGAGTTTAGGAACAGACAATGTTGTGGTTGATATTCAAATGTTATCCCAAGAAGAT
GTTAATAATATAACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTACTTAGAGATTCTACACCCAGAAACAGGTGATAACACGAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGAAGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACAAAACGCTATGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCGATCTTGATTCCAAGCAC
TTCAAATGGTGGAGGAGCTGGTGTAACTAGGGTTGTGCCATTCACTGCTGCTTTTGGTTGGACAGGTAACAAATCAGATG
GTGCCTTCCTCTACAAATACATCAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.968

100

0.611
  amiA3 Streptococcus thermophilus LMD-9

60.061

100

0.602
  amiA3 Streptococcus thermophilus LMG 18311

59.909

100

0.6

Multiple sequence alignment