Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FGL23_RS08460 Genome accession   NZ_LR594049
Coordinates   1757441..1758937 (-) Length   498 a.a.
NCBI ID   WP_045634046.1    Uniprot ID   A0AB34SC64
Organism   Streptococcus gordonii strain NCTC10231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752441..1763937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08440 (NCTC10231_01684) comR/comR2 1753824..1754306 (-) 483 WP_061604085.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL23_RS08445 (NCTC10231_01685) amiF 1754505..1755428 (-) 924 WP_045634044.1 ATP-binding cassette domain-containing protein Regulator
  FGL23_RS08450 (NCTC10231_01686) amiE 1755439..1756506 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL23_RS08455 (NCTC10231_01687) amiD 1756515..1757441 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  FGL23_RS08460 (NCTC10231_01688) amiC 1757441..1758937 (-) 1497 WP_045634046.1 ABC transporter permease Regulator
  FGL23_RS08465 (NCTC10231_01689) amiA 1759002..1760993 (-) 1992 WP_045634047.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08470 (NCTC10231_01690) amiA 1761272..1763254 (-) 1983 WP_061603317.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55563.59 Da        Isoelectric Point: 9.9197

>NTDB_id=1127982 FGL23_RS08460 WP_045634046.1 1757441..1758937(-) (amiC) [Streptococcus gordonii strain NCTC10231]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSAEVQFPTGKKISSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1127982 FGL23_RS08460 WP_045634046.1 1757441..1758937(-) (amiC) [Streptococcus gordonii strain NCTC10231]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGGAAATTGATTTTTAAACAGGATCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CTAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACTGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAATTTGAAGAAAGCAAGCAGTTTTATGCTGTTCGTGAGGTGCCAGTTCTTGAACGTGTTCTTG
GCTTCTACGGGAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGCCAAGGACAAACAAAGTCAGCTGAAGTTCAATTCCCTACAGGAAAGAAAATTTCATCAGTT
AATATCTATTCACGAACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCGATTATTGGTTTGATTGGTATTGCAATCT
CTTATCTGATTGCTGTCCCATTAGGGTCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTGGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGCGCAGGAGACTGGCGTTCATATGTTCTTCCGGCAGTAATTCTGGGACTTTTGGGTGCGCCAA
GCACAGCTATCTGGATTCGTCGCTATATGATTGACTTGCAATCCCAAGACTTTGTACGTTTTGCTCGTGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGGGCTGTTAT
TGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAACTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

78.916

100

0.789
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783

Multiple sequence alignment