Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FGL23_RS08445 Genome accession   NZ_LR594049
Coordinates   1754505..1755428 (-) Length   307 a.a.
NCBI ID   WP_045634044.1    Uniprot ID   A0AB34SCZ6
Organism   Streptococcus gordonii strain NCTC10231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749505..1760428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08440 (NCTC10231_01684) comR/comR2 1753824..1754306 (-) 483 WP_061604085.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL23_RS08445 (NCTC10231_01685) amiF 1754505..1755428 (-) 924 WP_045634044.1 ATP-binding cassette domain-containing protein Regulator
  FGL23_RS08450 (NCTC10231_01686) amiE 1755439..1756506 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL23_RS08455 (NCTC10231_01687) amiD 1756515..1757441 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  FGL23_RS08460 (NCTC10231_01688) amiC 1757441..1758937 (-) 1497 WP_045634046.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34896.10 Da        Isoelectric Point: 6.7109

>NTDB_id=1127979 FGL23_RS08445 WP_045634044.1 1754505..1755428(-) (amiF) [Streptococcus gordonii strain NCTC10231]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESAEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKSGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1127979 FGL23_RS08445 WP_045634044.1 1754505..1755428(-) (amiF) [Streptococcus gordonii strain NCTC10231]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTCGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGTGAAACTTTCTCGCTCGTAGGTGAATCTGGTTCAGGGAAAACTACAATTGGTCGTG
CAATCATTGGTTTGAACGAAACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTGCGGAGATTATTCGTAAGATTCAAATGATTTTCCAGGATCCTGCGGCAAGCTTAAATGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCATTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAGAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACACGTTATCCGCATGAATTTTCAGGAGGGCAACGCCAACGTATTGGG
ATAGCGCGGGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTCCTAAACCTTCTAAAGAAATTCCAAAAAGAGTTGGGGTTGACCTACCTATTCATCGCTCACGATTTGTCAGTGG
TACGCTTCATTTCGGATCGTATCGCAGTAATCTATAAAGGTGTTATTGTTGAAGTTGCTGAAACAGAAGAGCTCTTTAAC
AATCCAATTCATCCTTATACCAAATCGTTATTATCGGCCGTTCCAATTCCAGATCCAATCTTGGAGCGTAAAAAAGTCCT
TAAAGTCTACGATCCAGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAATCTGGCCACTTTGTTT
GGGCTAACAAAACTGAAGTAGAGAACTATAAAAAAGAACTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.275

99.674

0.86
  amiF Streptococcus thermophilus LMD-9

85.948

99.674

0.857
  amiF Streptococcus salivarius strain HSISS4

85.294

99.674

0.85

Multiple sequence alignment