Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGL23_RS08455 Genome accession   NZ_LR594049
Coordinates   1756515..1757441 (-) Length   308 a.a.
NCBI ID   WP_045634045.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751515..1762441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08440 (NCTC10231_01684) comR/comR2 1753824..1754306 (-) 483 WP_061604085.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL23_RS08445 (NCTC10231_01685) amiF 1754505..1755428 (-) 924 WP_045634044.1 ATP-binding cassette domain-containing protein Regulator
  FGL23_RS08450 (NCTC10231_01686) amiE 1755439..1756506 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL23_RS08455 (NCTC10231_01687) amiD 1756515..1757441 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  FGL23_RS08460 (NCTC10231_01688) amiC 1757441..1758937 (-) 1497 WP_045634046.1 ABC transporter permease Regulator
  FGL23_RS08465 (NCTC10231_01689) amiA 1759002..1760993 (-) 1992 WP_045634047.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34631.59 Da        Isoelectric Point: 9.7223

>NTDB_id=1127981 FGL23_RS08455 WP_045634045.1 1756515..1757441(-) (amiD) [Streptococcus gordonii strain NCTC10231]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIVMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1127981 FGL23_RS08455 WP_045634045.1 1756515..1757441(-) (amiD) [Streptococcus gordonii strain NCTC10231]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCAGCCTA
TTCATACTGGAGATCTGTTATTCGTCAATTTCTGAAAAAGAAATCTACCATTGTTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCAATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCTAAATCTGTTGACCGCGTTATGATGGAAGTTTATAATGTCATCTCAAATATTCCGCAATTATTGATTGTTATTGTC
TTGACTTATTCGATCGGAGCTGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAACTGGTATCTGTTATCATGACAACTAGCTCTCAAATGCTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTAACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACCAATGCTTACCTTTTCTGGATTCCGTTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTGGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.468

100

0.825
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment