Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL23_RS08465 Genome accession   NZ_LR594049
Coordinates   1759002..1760993 (-) Length   663 a.a.
NCBI ID   WP_045634047.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754002..1765993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08445 (NCTC10231_01685) amiF 1754505..1755428 (-) 924 WP_045634044.1 ATP-binding cassette domain-containing protein Regulator
  FGL23_RS08450 (NCTC10231_01686) amiE 1755439..1756506 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL23_RS08455 (NCTC10231_01687) amiD 1756515..1757441 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  FGL23_RS08460 (NCTC10231_01688) amiC 1757441..1758937 (-) 1497 WP_045634046.1 ABC transporter permease Regulator
  FGL23_RS08465 (NCTC10231_01689) amiA 1759002..1760993 (-) 1992 WP_045634047.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08470 (NCTC10231_01690) amiA 1761272..1763254 (-) 1983 WP_061603317.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08475 (NCTC10231_01691) amiA3 1763505..1765463 (-) 1959 WP_061603318.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73329.65 Da        Isoelectric Point: 5.0226

>NTDB_id=1127983 FGL23_RS08465 WP_045634047.1 1759002..1760993(-) (amiA) [Streptococcus gordonii strain NCTC10231]
MKKGKNLALAGVALLATGVLAACSNSTSNSSNSSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYTLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQSADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSYLVGVNIDRQT
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTASAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVDEAA
AEKTDVNKRYEKYAAAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMVSYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=1127983 FGL23_RS08465 WP_045634047.1 1759002..1760993(-) (amiA) [Streptococcus gordonii strain NCTC10231]
ATGAAGAAAGGTAAAAACCTTGCACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATTGATGGTCTTTTGGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATACACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAATATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAGTATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAATCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTATTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATACTTTGACGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTCAGTGCGGCTAGACTAGCTCCTACAAGTGCTACTTTCTCCAAAGTAGAAA
AAGAATTTAAAGATAATATCGTTTATACACCACAAGATTCTTCAAGTTATTTAGTTGGGGTGAACATTGATCGTCAAACA
TACAATCACACAGCTAAGTCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAATAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGCCTTTACAATAAAGAAAAAGCTAAAGCTGAATTTGCGAA
AGCTAAAAAAGCTCTTCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTAGTGCTA
AAGTTCAGCGCGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACATATTATGCTGCTTCAGCTGCTGAAGAAGACTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGTGGTGAAAACACCAAAACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAGCTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGTAAGCTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.451

100

0.606
  amiA3 Streptococcus thermophilus LMD-9

59.699

100

0.599
  amiA3 Streptococcus thermophilus LMG 18311

59.248

100

0.594

Multiple sequence alignment