Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL23_RS08480 Genome accession   NZ_LR594049
Coordinates   1765676..1767637 (-) Length   653 a.a.
NCBI ID   WP_061603319.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760676..1772637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS08470 (NCTC10231_01690) amiA 1761272..1763254 (-) 1983 WP_061603317.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08475 (NCTC10231_01691) amiA3 1763505..1765463 (-) 1959 WP_061603318.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08480 (NCTC10231_01692) amiA 1765676..1767637 (-) 1962 WP_061603319.1 peptide ABC transporter substrate-binding protein Regulator
  FGL23_RS08485 (NCTC10231_01693) pbp3 1767929..1769167 (+) 1239 WP_061603320.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL23_RS08490 (NCTC10231_01694) sufB 1769376..1770788 (-) 1413 WP_008809630.1 Fe-S cluster assembly protein SufB -
  FGL23_RS08495 (NCTC10231_01695) sufU 1770806..1771243 (-) 438 WP_060970833.1 Fe-S cluster assembly sulfur transfer protein SufU -
  FGL23_RS08500 (NCTC10231_01696) - 1771230..1772462 (-) 1233 WP_061603321.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72796.96 Da        Isoelectric Point: 4.8791

>NTDB_id=1127986 FGL23_RS08480 WP_061603319.1 1765676..1767637(-) (amiA) [Streptococcus gordonii strain NCTC10231]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYIYQTDPDTLDYTNSNRQTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADNNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AIDDYTVQYTLNQPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKDN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDASSFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTVYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEKDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEDADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGSPLVMKAVPFTKPYSLVGIKGDVYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1127986 FGL23_RS08480 WP_061603319.1 1765676..1767637(-) (amiA) [Streptococcus gordonii strain NCTC10231]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACTTTAGCGGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATATCTATCAGACAGACCCAGATACCTTGGATTATACAAATTCTAATCGTCAAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTAGCA
GAAGATTGGACGGTATCAAAAGATGGTTTGACTTATACATATAAGCTCCGGAAGGGTGCTAAATGGTATACTTCTGAGGG
TGAAGAATATGCAGAAGTTAAAGCACAGGACTTTGTTACTGGTTTGAAGCATGCAGCAGATAATAATTCAGATGCGTTGC
CGATTGTTCAAAGCTCTATCAAAGGTTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGATTGACGATTATACAGTCCAATATACACTCAATCAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACTGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCTAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGGATAAT
GTAAAAATTTCAGACGTCAAGTTGACTTACTTTGATGGTTCTGATCAAGAGGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTGCAAAAACAATACAAAGACAATATTGTATACT
CTCCTCAAGATGCATCATCATTCTTTTACGCCTTTAACTACAACCGTAAAGCCTACAATTTTACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACAGCTGCTCTCTTAAACAAAGATTTCCGTCAGGCAATCAACTTCGCTTTCAATCGGACAGT
TTATGGAGCTCAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAATAGCTTAGTACCGCCAACATTCGTTCAGA
TTGGTGAAAAGAACTTCGGAGACATAGTTGAAAAAGATTTGGTGAGCTATGGTGATGAGTGGAAGGGTGTTAAGTTGGAC
GATGCTCAGGATGGACTCTTTAATGTTGAAAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCAATTCACTTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAGCAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCAGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGATGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAATGGTGGCAGTCC
GCTTGTTATGAAAGCAGTTCCGTTCACAAAACCATACTCTCTGGTTGGTATCAAAGGTGATGTCTATGTCTTTAAGTACA
GAGAAGTGCAAAATGACATTGTAACTGCAAAAGACTATAAGGCCGCAGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.23

100

0.576
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.565

Multiple sequence alignment