Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FGL14_RS05750 Genome accession   NZ_LR594045
Coordinates   1096060..1096902 (-) Length   280 a.a.
NCBI ID   WP_138083860.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1094970..1095998 1096060..1096902 flank 62


Gene organization within MGE regions


Location: 1094970..1096902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL14_RS05745 (NCTC9413_01183) - 1094976..1095998 (+) 1023 WP_170078128.1 IS30 family transposase -
  FGL14_RS05750 (NCTC9413_01184) dprA 1096060..1096902 (-) 843 WP_138083860.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31286.25 Da        Isoelectric Point: 8.5827

>NTDB_id=1127745 FGL14_RS05750 WP_138083860.1 1096060..1096902(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
MNHFELYKLKKAGLTNKNILNILDYQEHQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLDKPKLAIIGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AVIGTGLDRFYPKENQELQTFLGRKHLILTEYGPGEEPLSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGESEGCLQLIKEGATCVTSGMDILSEYQK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1127745 FGL14_RS05750 WP_138083860.1 1096060..1096902(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAGA
ACACCAGGAAAAATCGTTGTCACTTCGAGATATGGCTGTTGTTTCTGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAAATTAAAAATGGAATTTAAACAATTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCTTTGAAAGAAATATATAATCCGCCCGTCCTCTTGTTTTTTCAAGGCAATTTAGACCTTCTTGATAAACCTAAATT
AGCCATTATTGGCTCCAGGCGCTCAAGCGATACTGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTCAGCGGACTTGCTCGAGGTATTGACACTAGTGCACATTTAGCCTGTCTTAAAAACGGAGGACAAACCATT
GCGGTGATAGGAACAGGATTAGACCGTTTTTATCCCAAAGAAAATCAAGAATTACAAACATTCTTAGGAAGGAAACACCT
TATCTTGACAGAATACGGTCCAGGAGAAGAACCACTATCGTATCACTTTCCGGAACGCAATCGTATTATTGCAGGGCTTA
GTCGAGGTATTCTCGTCGTTGAAGCAAAAAATCGCTCAGGTTCCTTGATTACTTGTCAAATCGGGATAGAAGAGGGTCGA
GATATTTTTGCTGTTCCAGGAAACATTTTGGACGGCGAATCTGAAGGTTGTTTACAGCTTATAAAAGAGGGAGCAACCTG
CGTCACATCAGGGATGGACATCCTTTCTGAATATCAAAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(68-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

66.906

99.286

0.664
  dprA/cilB/dalA Streptococcus mitis SK321

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae D39

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae R6

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.215

99.643

0.6
  dprA Lactococcus lactis subsp. cremoris KW2

56.835

99.286

0.564
  dprA Legionella pneumophila strain ERS1305867

42.5

85.714

0.364
  dprA Haemophilus influenzae Rd KW20

37.828

95.357

0.361

Multiple sequence alignment