Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FGL16_RS07605 Genome accession   NZ_LR594043
Coordinates   1442477..1443088 (-) Length   203 a.a.
NCBI ID   WP_223375679.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1441788..1442252 1442477..1443088 flank 225


Gene organization within MGE regions


Location: 1441788..1443088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS07600 (NCTC10237_01500) tnpA 1441788..1442252 (-) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  FGL16_RS07605 (NCTC10237_01501) clpP 1442477..1443088 (-) 612 WP_223375679.1 ATP-dependent Clp protease proteolytic subunit Regulator

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22345.73 Da        Isoelectric Point: 6.7324

>NTDB_id=1127641 FGL16_RS07605 WP_223375679.1 1442477..1443088(-) (clpP) [Streptococcus suis strain NCTC10237]
MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1127641 FGL16_RS07605 WP_223375679.1 1442477..1443088(-) (clpP) [Streptococcus suis strain NCTC10237]
ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTC
ACGCCTTTTGAAAGACCGTATTATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGC
TTTTCCTTGATGCCCAAGACCCTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTT
GCCATTGTAGACACGATGAATTTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCAT
CATTGCATCAAGCGGTGCCAAGGGCAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGTGGAA
CTGGTGGTGGTACTCAGCAAACAGATATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATC
TTGGCAGACAACTCAGGTAAGACAGTCAAGCAAATCCACAAGGATGCGGAACGTGATTACTGGATGTCAGCTGAAGAAAC
CCTGGCTTACGGATTTATTGACCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

96.552

0.892
  clpP Streptococcus pyogenes MGAS315

92.347

96.552

0.892
  clpP Streptococcus mutans UA159

90.306

96.552

0.872
  clpP Streptococcus thermophilus LMD-9

88.776

96.552

0.857
  clpP Streptococcus thermophilus LMG 18311

88.776

96.552

0.857
  clpP Streptococcus pneumoniae R6

89.231

96.059

0.857
  clpP Streptococcus pneumoniae Rx1

89.231

96.059

0.857
  clpP Streptococcus pneumoniae D39

89.231

96.059

0.857
  clpP Streptococcus pneumoniae TIGR4

89.231

96.059

0.857
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.756

97.044

0.813
  clpP Lactococcus lactis subsp. cremoris KW2

83.249

97.044

0.808
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

96.552

0.562
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

95.074

0.557

Multiple sequence alignment