Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FGL16_RS05130 Genome accession   NZ_LR594043
Coordinates   971687..972529 (-) Length   280 a.a.
NCBI ID   WP_014735834.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 966687..977529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS05105 (NCTC10237_01002) tnpA 967389..967853 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  FGL16_RS05115 (NCTC10237_01003) rplL 968007..968372 (-) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  FGL16_RS05120 (NCTC10237_01004) rplJ 968438..968932 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  FGL16_RS05125 (NCTC10237_01006) topA 969501..971594 (-) 2094 WP_004195696.1 type I DNA topoisomerase -
  FGL16_RS05130 (NCTC10237_01007) dprA 971687..972529 (-) 843 WP_014735834.1 DNA-processing protein DprA Machinery gene
  FGL16_RS05135 (NCTC10237_01008) - 972590..973147 (-) 558 WP_014735833.1 sugar O-acetyltransferase -
  FGL16_RS05140 (NCTC10237_01009) - 973286..973567 (+) 282 WP_014735832.1 rhodanese-like domain-containing protein -
  FGL16_RS05145 (NCTC10237_01010) - 973664..974215 (+) 552 WP_014735831.1 DUF1836 domain-containing protein -
  FGL16_RS05150 (NCTC10237_01011) - 974205..974855 (+) 651 WP_014735830.1 hemolysin III family protein -
  FGL16_RS05155 (NCTC10237_01012) - 974888..975898 (-) 1011 WP_014735829.1 YdcF family protein -
  FGL16_RS05160 (NCTC10237_01013) - 975901..976674 (-) 774 WP_014735828.1 ribonuclease HII -
  FGL16_RS05165 (NCTC10237_01014) ylqF 976661..977512 (-) 852 WP_014735827.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31321.15 Da        Isoelectric Point: 8.3160

>NTDB_id=1127633 FGL16_RS05130 WP_014735834.1 971687..972529(-) (dprA) [Streptococcus suis strain NCTC10237]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNIAVVSESKNPVLFMENYKNLDIKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEPNAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCEHALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1127633 FGL16_RS05130 WP_014735834.1 971687..972529(-) (dprA) [Streptococcus suis strain NCTC10237]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACTTTGCGCAATATCGCTGTCGTTTCTGAAAGTAAAAATCCAGTGTTATTTATGGAAAACT
ATAAGAATTTGGATATCAAAGCCTGTCGCGAGGAATTTAATAAATATCCTTCCTTTTCAATTTTGGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGAGATTTAGAATTGCTAGAAAAATCAAAGCT
TGCAGTCGTTGGTACACGAAATGCAAGTAAAAATGGTATTCAGTCTGTTCAGAAAATTATCAAGGAACTAAATAATCGTT
TTGTCATTGTTAGTGGTCTGGCAAGGGGAATTGACACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAGGATTTGCAGACCTATATTGGAAAACACCATTT
GGTGCTGACAGAGTATGAACCAAATGCCCAGCCTTTAAAATACCATTTTCCTGAGCGAAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAGGCAAAAATGCGGTCGGGTAGCTTGATTACCTGCGAACATGCTTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.929

100

0.689
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis SK321

63.214

100

0.632
  dprA Lactococcus lactis subsp. cremoris KW2

59.643

100

0.596
  dprA Vibrio campbellii strain DS40M4

36.519

100

0.382
  dprA Bacillus subtilis subsp. subtilis str. 168

51.244

71.786

0.368
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368
  dprA Latilactobacillus sakei subsp. sakei 23K

40.562

88.929

0.361

Multiple sequence alignment