Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LG36_RS09360 Genome accession   NZ_CP009472
Coordinates   1971622..1972581 (-) Length   319 a.a.
NCBI ID   WP_038601949.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966622..1977581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS09340 (LG36_1792) - 1966926..1967672 (-) 747 WP_038601940.1 tyrosine-protein phosphatase -
  LG36_RS09345 (LG36_1793) - 1967874..1969682 (-) 1809 WP_038601943.1 oligopeptide ABC transporter substrate-binding protein -
  LG36_RS09350 (LG36_1794) oppC 1969788..1970672 (-) 885 WP_038601946.1 murein tripeptide/oligopeptide ABC transporter permease OppC -
  LG36_RS09355 (LG36_1795) oppB 1970682..1971641 (-) 960 WP_038601948.1 murein tripeptide/oligopeptide ABC transporter permease OppB -
  LG36_RS09360 (LG36_1796) amiE 1971622..1972581 (-) 960 WP_038601949.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF Regulator
  LG36_RS09365 (LG36_1797) oppD 1972578..1973594 (-) 1017 WP_080739882.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD -
  LG36_RS09370 (LG36_1798) rplT 1973820..1974179 (-) 360 WP_003132352.1 50S ribosomal protein L20 -
  LG36_RS09375 (LG36_1799) rpmI 1974341..1974541 (-) 201 WP_003132353.1 50S ribosomal protein L35 -
  LG36_RS09380 (LG36_1800) infC 1974670..1975164 (-) 495 WP_003132354.1 translation initiation factor IF-3 -
  LG36_RS12315 - 1975627..1975755 (+) 129 WP_003132356.1 hypothetical protein -
  LG36_RS09385 (LG36_1801) - 1975774..1976322 (+) 549 WP_038601957.1 hypothetical protein -
  LG36_RS09390 (LG36_1802) - 1976338..1977039 (-) 702 WP_038602927.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35990.17 Da        Isoelectric Point: 8.9930

>NTDB_id=112752 LG36_RS09360 WP_038601949.1 1971622..1972581(-) (amiE) [Lactococcus lactis strain AI06]
MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGQLIYKGQDVS
KKKIRNQLKYNKEVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKLDANTENKRIHELLDIVGLPKQALEQYPFQFSGGQQ
QRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQKNLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRR
DIFDEPQHIYTKRLLSAIPSIDVTRRAENRENRLKVEQDFEDKKANFYDKDGHALPLKKISESHWAALPKGGENVESNY

Nucleotide


Download         Length: 960 bp        

>NTDB_id=112752 LG36_RS09360 WP_038601949.1 1971622..1972581(-) (amiE) [Lactococcus lactis strain AI06]
GTGAGCGAAATTCTTAATTTAAAGGACTTAAAAGTTTATTATCCTATTCGATCTGGTTTCTTTAATCGAGTGACAGATAA
TGTTTTAGCCGTTGATGGAGTAGATTTAACGATTCATGAAGGAGAAACTGTCGGTTTAGTTGGTGAATCTGGCTCTGGAA
AATCAACGATTGGCAAAACAATTGTTGGTTTAGAACAAATGACATCAGGACAATTGATTTACAAAGGACAAGATGTCAGC
AAAAAAAAGATAAGAAACCAGCTCAAATACAATAAAGAGGTTCAAATGATTTTTCAAGATGCATTTTCGAGTTTGAATCC
ACGGAAAACAATTTACGATATCATTGCGGAGCCTATTCGGAATTTTGAAAAATTAGATGCTAATACAGAAAATAAACGGA
TTCATGAATTATTGGATATTGTTGGACTACCTAAACAAGCTTTAGAACAGTATCCTTTCCAATTTTCTGGAGGTCAACAA
CAAAGAATTGGAATCGCACGGGCAGTTGCTACTAATCCTAAGTTAATTGTGGCAGATGAACCAGTTTCAGCATTAGACTT
ATCTGTTCAAGCTCAAGTTTTGAATTTCATGAAGCTCATTCAAAAGAACTTGGGAATTGCATTTCTTTTTATTTCTCATG
ATTTAGGGGTTGTCCGCCATATGACCGATAATATTGCGGTCATGCACAACGGTCGAATTGTCGAAAAAGGAACACGAAGA
GATATTTTTGATGAGCCACAGCACATTTATACTAAACGACTCTTATCTGCTATCCCTTCGATCGATGTTACAAGAAGAGC
AGAAAATCGGGAAAACCGTCTAAAAGTTGAACAAGACTTTGAGGATAAAAAAGCAAACTTTTATGATAAAGACGGACACG
CTTTGCCCTTAAAAAAAATAAGTGAGAGCCATTGGGCAGCTTTGCCAAAAGGAGGGGAAAATGTGGAAAGTAATTATTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(234-271)

ABC transporter (ABC_tran)

(32-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

35.952

100

0.373
  amiE Streptococcus thermophilus LMG 18311

35.952

100

0.373
  amiE Streptococcus thermophilus LMD-9

35.952

100

0.373
  amiF Streptococcus thermophilus LMG 18311

47.718

75.549

0.361
  amiF Streptococcus thermophilus LMD-9

47.718

75.549

0.361
  oppD Streptococcus mutans UA159

38.206

94.357

0.361
  amiF Streptococcus salivarius strain HSISS4

46

78.37

0.361

Multiple sequence alignment