Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   FGK97_RS01015 Genome accession   NZ_LR594037
Coordinates   191600..192622 (+) Length   340 a.a.
NCBI ID   WP_041783985.1    Uniprot ID   A0AAP6EMB9
Organism   Streptococcus anginosus strain NCTC11064     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186600..197622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK97_RS00990 (NCTC11064_00194) - 187742..188272 (+) 531 WP_003032280.1 FUSC family protein -
  FGK97_RS00995 (NCTC11064_00195) - 188349..188708 (+) 360 WP_003028467.1 MerR family transcriptional regulator -
  FGK97_RS01000 (NCTC11064_00196) glnA 188747..190093 (+) 1347 WP_106079126.1 type I glutamate--ammonia ligase -
  FGK97_RS01005 (NCTC11064_00197) - 190282..190647 (+) 366 WP_003027003.1 DUF1033 family protein -
  FGK97_RS01010 (NCTC11064_00198) comYA 190717..191658 (+) 942 WP_003027001.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK97_RS01015 (NCTC11064_00199) comYB 191600..192622 (+) 1023 WP_041783985.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK97_RS01020 (NCTC11064_00200) comYC 192619..192936 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK97_RS01025 (NCTC11064_00201) comYD 192896..193324 (+) 429 WP_171004445.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGK97_RS01030 (NCTC11064_00202) comGE/cglE 193296..193589 (+) 294 WP_021001233.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGK97_RS01035 (NCTC11064_00203) comGF/cglF 193573..194010 (+) 438 WP_041783987.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGK97_RS01040 (NCTC11064_00204) comGG 193991..194317 (+) 327 WP_021001234.1 competence type IV pilus minor pilin ComGG -
  FGK97_RS01045 (NCTC11064_00205) comYH 194389..195342 (+) 954 WP_138099333.1 class I SAM-dependent methyltransferase Machinery gene
  FGK97_RS01050 (NCTC11064_00206) - 195389..196588 (+) 1200 WP_021001236.1 acetate kinase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39122.46 Da        Isoelectric Point: 9.6306

>NTDB_id=1127388 FGK97_RS01015 WP_041783985.1 191600..192622(+) (comYB) [Streptococcus anginosus strain NCTC11064]
MQQDMSLLSRQKRKKLSIVRQKKVVELLNNLFSSGFHLAEMIDFLKRSALLEKTYVEKMKEGLATGKPFSEIMASLGFSD
SVVTQLSLAELHGNLSLSLTKIEEYLENVSKVKKKLIEVATYPFILLIFLVFIMLGLRNYLLPQLERQNSATQLISQLPQ
IFLGSLVVVLVLLAIGFYWFRKSSKIVVFSFLARLPFCGTFIQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEIALQNGQEFSQVVKYYPFFKKELGLIIEYGEVKSKLGCELEVYAQKTWETFFKRVHQAMNVIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=1127388 FGK97_RS01015 WP_041783985.1 191600..192622(+) (comYB) [Streptococcus anginosus strain NCTC11064]
ATGCAGCAGGACATGTCACTTTTGAGCAGGCAGAAACGGAAAAAATTATCCATAGTTAGGCAGAAAAAAGTCGTAGAGTT
GCTGAATAATCTTTTTTCTAGCGGCTTTCATTTAGCAGAAATGATTGATTTTTTGAAGCGGAGTGCCCTCCTAGAAAAAA
CCTATGTGGAAAAGATGAAAGAGGGTTTAGCAACAGGAAAACCTTTTTCAGAAATTATGGCTAGTTTAGGATTTTCAGAT
AGTGTTGTCACTCAGCTTTCACTGGCAGAGCTACATGGGAATCTCTCACTCAGCCTGACTAAGATTGAGGAATACTTGGA
AAATGTCTCAAAAGTCAAGAAAAAGTTAATTGAGGTAGCCACTTATCCATTCATTTTACTTATTTTTTTAGTATTCATTA
TGTTAGGGCTGCGCAATTATTTACTTCCGCAGTTAGAACGCCAAAATAGTGCAACGCAGCTGATTAGTCAGTTGCCGCAA
ATTTTTCTGGGTTCACTAGTAGTAGTCCTTGTTTTGTTAGCGATAGGTTTTTATTGGTTTAGAAAAAGCTCAAAAATAGT
AGTGTTTAGCTTCTTGGCTCGACTTCCTTTTTGTGGAACTTTTATTCAAACCTATTTGACAGCTTATTATGCGAGAGAAT
GGGGGAATATGATTGGTCAAGGTTTAGAACTTAGTCAGATTTTTCAAATGATGCAAGGGCAACGCTCTGCTATGTTTCAA
GAAATTGGAAAAGATTTAGAAATTGCGTTGCAAAATGGTCAGGAATTTTCACAAGTAGTGAAATATTATCCGTTTTTTAA
AAAGGAATTGGGCTTGATAATTGAATACGGTGAAGTGAAATCCAAATTGGGGTGTGAATTAGAAGTTTATGCCCAAAAAA
CATGGGAGACATTTTTTAAACGTGTTCATCAAGCGATGAATGTCATTCAACCACTAGTGTTTGTCTTTGTGGCTCTAATG
ATTGTATTGTTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.529

100

0.735
  comGB/cglB Streptococcus mitis NCTC 12261

69.527

99.412

0.691
  comGB/cglB Streptococcus mitis SK321

67.857

98.824

0.671
  comGB/cglB Streptococcus pneumoniae TIGR4

67.56

98.824

0.668
  comGB/cglB Streptococcus pneumoniae R6

67.56

98.824

0.668
  comGB/cglB Streptococcus pneumoniae Rx1

67.56

98.824

0.668
  comGB/cglB Streptococcus pneumoniae D39

67.56

98.824

0.668
  comYB Streptococcus mutans UA159

60.882

100

0.609
  comYB Streptococcus mutans UA140

60.588

100

0.606
  comGB Lactococcus lactis subsp. cremoris KW2

52.802

99.706

0.526

Multiple sequence alignment