Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FGK96_RS07980 Genome accession   NZ_LR594036
Coordinates   1648958..1650940 (-) Length   660 a.a.
NCBI ID   WP_138082908.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643958..1655940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS07960 (NCTC10710_01650) amiF 1644462..1645385 (-) 924 WP_138082900.1 ATP-binding cassette domain-containing protein Regulator
  FGK96_RS07965 (NCTC10710_01651) amiE 1645378..1646448 (-) 1071 WP_138082902.1 ABC transporter ATP-binding protein Regulator
  FGK96_RS07970 (NCTC10710_01652) amiD 1646463..1647389 (-) 927 WP_138082904.1 oligopeptide ABC transporter permease OppC Regulator
  FGK96_RS07975 (NCTC10710_01653) amiC 1647389..1648888 (-) 1500 WP_138082906.1 ABC transporter permease Regulator
  FGK96_RS07980 (NCTC10710_01654) amiA3 1648958..1650940 (-) 1983 WP_138082908.1 peptide ABC transporter substrate-binding protein Regulator
  FGK96_RS07985 (NCTC10710_01655) pbp3 1651265..1652503 (+) 1239 WP_138082910.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGK96_RS07990 (NCTC10710_01656) pbp3 1652550..1653758 (+) 1209 WP_138082912.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGK96_RS07995 (NCTC10710_01657) - 1653850..1655022 (+) 1173 WP_138082914.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73392.97 Da        Isoelectric Point: 6.7789

>NTDB_id=1127363 FGK96_RS07980 WP_138082908.1 1648958..1650940(-) (amiA3) [Streptococcus porcinus strain NCTC10710]
MKNGKWLAAVGVAILSVSVLAACSNGSSKDSKSKTYSYVYTTDPDTLDYLVSGRSTTSEIIQNSVDGLMEYDNMGNLIPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYANVTADDFVTGLKHAADKGSDALYLVQDSIKGLSDYVEGKNKDFSTVG
VKAIDKHTLQYTLNKPESFWNSKLTYGILSPVNADFLKSKGKDFGKASDASSILYNGPFLISSLTSKSSIEFVKNENYWD
KKDVHVDGVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYTEVKKKYGDNIIYAPQKSNIYYATFNLNRTAYEHTKK
TSDKQKDDTRKAVLNKDFRQALTFGFNRKSYTAQTAGEEAAGKSLRNTLVPPAFVQINGQDFGKTVEKELATYGDQWKDV
NLADAQDGLYNPEKAKMQMDKAKKALEAQGVQFPIHLDMPQDQTASGLMQQAQSMKQSIEKSLGKENVVVDIIELNSDTY
NNITYMAETTNQQDWDLSTASGWSPDYADPSSYLDIFNPTMAAAQTKFIGLNPVKDVAIANEAGLEEFSSLDNEAGKITD
NQDERFKKYAKAQAALTDSAVYIPTYSLGGTPSVTKVVPFTAAFGWSGNKSDASTFYKYIKLQDKPITSKDYGQALKKWK
KDKEKSNKKYADSLEKHMEK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1127363 FGK96_RS07980 WP_138082908.1 1648958..1650940(-) (amiA3) [Streptococcus porcinus strain NCTC10710]
ATGAAAAATGGCAAGTGGTTAGCTGCTGTTGGAGTAGCGATTTTATCAGTCTCTGTTCTAGCGGCTTGTAGCAATGGATC
AAGCAAAGATAGTAAGTCAAAAACGTATAGTTATGTTTATACAACAGATCCAGATACTTTGGATTATTTGGTTTCAGGAC
GTTCAACAACAAGTGAAATCATTCAAAACAGTGTCGACGGCTTAATGGAATATGATAACATGGGGAACCTAATCCCTTCA
GTTGCTAAAAGCTGGACAGTATCTAAAGATGGCTTAACATATACCTATAAAATTCGTAAGGATTCAAAATGGTACACCGC
TGATGGTGAAGAGTATGCAAATGTTACAGCAGATGATTTTGTAACTGGATTGAAGCATGCTGCAGACAAAGGATCAGATG
CTCTTTACCTTGTACAAGATTCTATAAAAGGTCTGAGTGATTATGTTGAAGGAAAAAACAAGGACTTCTCAACTGTAGGC
GTAAAAGCTATTGATAAGCATACCCTTCAATATACGCTTAATAAACCAGAAAGCTTTTGGAATTCAAAATTAACATATGG
AATTCTTTCACCTGTTAATGCTGATTTCTTAAAATCTAAAGGTAAGGATTTTGGTAAAGCGTCCGATGCATCCTCCATCC
TATACAATGGACCATTCCTGATTTCATCTTTAACAAGTAAGTCATCTATTGAATTTGTTAAAAATGAAAATTATTGGGAC
AAAAAAGATGTCCATGTTGATGGTGTACAACTAACCTATTATGATGGTCAAGATCAAGAGTCACTATTTAGGAATTTTGA
CAAAGGTGCTTATTCTGCAGCGCGTCTTTTCCCTACAACACCTTCTTACACAGAAGTTAAGAAAAAATATGGTGACAACA
TCATTTATGCACCACAAAAATCAAACATTTATTATGCCACATTTAATCTGAATCGTACAGCCTATGAACATACGAAGAAA
ACTAGTGATAAACAAAAAGACGATACTCGTAAGGCTGTTTTAAACAAAGATTTCCGTCAAGCCTTAACATTTGGTTTCAA
TAGAAAATCATATACGGCTCAGACTGCCGGTGAAGAAGCAGCAGGTAAATCACTTCGGAATACTTTAGTTCCACCTGCAT
TTGTTCAAATTAACGGTCAAGATTTTGGTAAAACGGTTGAAAAAGAACTAGCGACTTATGGGGATCAATGGAAAGATGTT
AATCTTGCTGATGCGCAAGATGGTCTCTATAATCCAGAAAAAGCTAAAATGCAAATGGACAAAGCTAAAAAAGCTTTAGA
AGCTCAAGGTGTACAATTCCCTATTCATCTCGATATGCCTCAAGATCAGACTGCATCAGGCTTAATGCAACAAGCTCAAT
CTATGAAACAATCTATTGAAAAATCGCTAGGGAAAGAAAATGTCGTTGTTGATATTATTGAACTTAATTCAGACACATAT
AACAACATCACTTATATGGCTGAAACAACAAATCAACAAGACTGGGATCTCTCAACTGCCTCAGGTTGGAGCCCAGACTA
CGCTGATCCTTCTTCTTACTTGGATATCTTCAATCCAACGATGGCGGCTGCTCAAACAAAATTCATTGGTCTTAATCCAG
TAAAAGACGTTGCTATTGCTAATGAAGCAGGTTTGGAAGAATTTTCAAGTTTAGATAATGAAGCTGGTAAAATTACAGAT
AATCAGGACGAAAGATTTAAAAAATATGCCAAAGCACAAGCAGCTTTAACAGATTCAGCTGTTTATATTCCAACCTACTC
ACTAGGTGGAACTCCTTCTGTTACTAAAGTAGTACCATTTACAGCAGCTTTTGGCTGGTCTGGTAATAAATCTGATGCAA
GTACATTTTATAAATACATTAAACTTCAAGATAAACCTATAACATCAAAAGACTATGGTCAAGCTTTGAAAAAATGGAAA
AAAGATAAAGAAAAATCTAATAAAAAATATGCCGATTCTTTAGAAAAGCATATGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

54.091

100

0.541
  amiA3 Streptococcus thermophilus LMD-9

53.939

100

0.539
  amiA Streptococcus salivarius strain HSISS4

53.636

100

0.536

Multiple sequence alignment