Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FGK96_RS07975 Genome accession   NZ_LR594036
Coordinates   1647389..1648888 (-) Length   499 a.a.
NCBI ID   WP_138082906.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642389..1653888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS07960 (NCTC10710_01650) amiF 1644462..1645385 (-) 924 WP_138082900.1 ATP-binding cassette domain-containing protein Regulator
  FGK96_RS07965 (NCTC10710_01651) amiE 1645378..1646448 (-) 1071 WP_138082902.1 ABC transporter ATP-binding protein Regulator
  FGK96_RS07970 (NCTC10710_01652) amiD 1646463..1647389 (-) 927 WP_138082904.1 oligopeptide ABC transporter permease OppC Regulator
  FGK96_RS07975 (NCTC10710_01653) amiC 1647389..1648888 (-) 1500 WP_138082906.1 ABC transporter permease Regulator
  FGK96_RS07980 (NCTC10710_01654) amiA3 1648958..1650940 (-) 1983 WP_138082908.1 peptide ABC transporter substrate-binding protein Regulator
  FGK96_RS07985 (NCTC10710_01655) pbp3 1651265..1652503 (+) 1239 WP_138082910.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGK96_RS07990 (NCTC10710_01656) pbp3 1652550..1653758 (+) 1209 WP_138082912.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55953.39 Da        Isoelectric Point: 10.0387

>NTDB_id=1127362 FGK96_RS07975 WP_138082906.1 1647389..1648888(-) (amiC) [Streptococcus porcinus strain NCTC10710]
MKKYIIERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKENYRNTIFERMGYISYYNSKELEANAE
KIDKSVSVEPTKANQKIYQKYIKSIGNGWELKRFEESKKFYAVRNIPIYERVWNFFSQLIVVDHPWVIQDKKNPNLARYI
RPELDPSVGPALVGSGTKHKYMLYFNGQFPFVHQNFVGFNLGTSYPTYANIPVIQVITQEQGRTLSKEVTFPNGTKKFSP
INIYSRTYKSPSKADARDRMNFGKDDSYTATENNHAEPSMIANSFIIGMIGVLLSYVFGLPIGMLMAYYKDGIFDRFSTG
ATTFMLALPSIALIYIVRFLGSIVGLPDTFPLLGASDPKSYVLPALILGILGTPGNVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAVVATIAGATLTETVFAFPGMGKMLIDAIKAANNTMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1127362 FGK96_RS07975 WP_138082906.1 1647389..1648888(-) (amiC) [Streptococcus porcinus strain NCTC10710]
ATGAAAAAGTATATTATTGAGCGCATCTTGAGGTCTTTAATATCAATTTTGCTGGTAACTACACTGACTTATGTCATTGT
TTTTACACTTGTTCCAACAAATTTGATTTTTAAACAGGATCCTAATTATAACAAGATGGTGACAACACCAGATAAAAAAG
AAAATTATCGAAATACGATTTTCGAGCGCATGGGTTATATTTCCTATTACAATAGTAAAGAATTAGAAGCTAACGCTGAG
AAGATAGATAAATCTGTTAGCGTTGAGCCAACGAAGGCTAATCAAAAAATATATCAAAAATATATCAAATCCATCGGAAA
TGGTTGGGAATTGAAACGTTTCGAAGAAAGTAAAAAGTTCTATGCAGTCCGTAACATACCAATCTATGAGCGGGTTTGGA
ATTTTTTTAGCCAATTGATAGTAGTTGACCATCCATGGGTGATTCAAGACAAAAAAAATCCAAACTTAGCTCGTTATATT
CGTCCAGAGCTAGATCCTTCAGTAGGCCCAGCCTTGGTGGGTTCAGGAACAAAACATAAGTACATGTTATACTTTAATGG
ACAGTTTCCTTTTGTTCACCAAAACTTTGTTGGTTTTAATTTGGGGACTTCTTACCCGACTTATGCTAACATTCCTGTCA
TTCAAGTTATTACACAAGAACAAGGGCGTACTCTATCTAAAGAAGTAACGTTCCCAAATGGGACTAAGAAGTTTTCGCCG
ATTAATATTTACTCTCGTACCTATAAATCACCTAGTAAGGCAGATGCTAGAGATCGAATGAATTTTGGAAAAGATGACTC
CTACACTGCAACGGAGAACAATCATGCAGAGCCATCGATGATAGCTAATTCCTTCATTATCGGGATGATTGGTGTTTTAT
TATCCTATGTCTTTGGCCTTCCAATTGGGATGTTGATGGCTTATTATAAAGATGGGATATTTGATCGTTTCTCAACAGGT
GCTACAACCTTTATGTTGGCACTTCCGAGTATTGCATTGATTTACATTGTCCGCTTCTTGGGCTCAATAGTTGGACTTCC
GGACACTTTTCCCTTGCTAGGGGCGAGTGATCCTAAGTCCTATGTTTTGCCGGCTCTTATTTTGGGAATTCTTGGAACGC
CTGGAAATGTAGTCTGGTTCCGTCGATACTTAGTTGACTTGCAAGGTAGCGATTTTGTTCGCTTTGCCCGTGCTAAAGGA
TTGACTGAAGCTGAAATATCTAAAAATCACCTATTTAAACAAGCGATGGTTCCTATTGTTAATGGAATTCCACAAGCAGT
AGTAGCTACTATTGCGGGTGCCACCTTGACTGAGACTGTCTTTGCCTTTCCAGGAATGGGTAAGATGCTGATCGATGCTA
TTAAGGCAGCTAATAATACAATGGTTGTTGGTCTTGTCTTTATATTCGCTGTTCTTTCTATTTTAGCTCTATTAGCTGGT
GACATCTTAATGACAATTCTTGACCCACGTATCAAATTATCTAGTAAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619

Multiple sequence alignment