Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGK96_RS07970 Genome accession   NZ_LR594036
Coordinates   1646463..1647389 (-) Length   308 a.a.
NCBI ID   WP_138082904.1    Uniprot ID   A0A4U9ZKR6
Organism   Streptococcus porcinus strain NCTC10710     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641463..1652389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS07960 (NCTC10710_01650) amiF 1644462..1645385 (-) 924 WP_138082900.1 ATP-binding cassette domain-containing protein Regulator
  FGK96_RS07965 (NCTC10710_01651) amiE 1645378..1646448 (-) 1071 WP_138082902.1 ABC transporter ATP-binding protein Regulator
  FGK96_RS07970 (NCTC10710_01652) amiD 1646463..1647389 (-) 927 WP_138082904.1 oligopeptide ABC transporter permease OppC Regulator
  FGK96_RS07975 (NCTC10710_01653) amiC 1647389..1648888 (-) 1500 WP_138082906.1 ABC transporter permease Regulator
  FGK96_RS07980 (NCTC10710_01654) amiA3 1648958..1650940 (-) 1983 WP_138082908.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34427.29 Da        Isoelectric Point: 7.1552

>NTDB_id=1127361 FGK96_RS07970 WP_138082904.1 1646463..1647389(-) (amiD) [Streptococcus porcinus strain NCTC10710]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVLMLIILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YISPGAEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMLLGVVVGALWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSVRVQVLRYRDLEYNLASQTLGTPVHKIATKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1127361 FGK96_RS07970 WP_138082904.1 1646463..1647389(-) (amiD) [Streptococcus porcinus strain NCTC10710]
ATGGCAACCATTGACAAAAGTAAATTTGAGTTTGTTGAACTCGACAGTTATGCATCAGAAGTCATTGATGCCCCGGCTTA
CTCATACTGGAAATCTGTTTTTCGTCAGTTCTTTTCGCGTAAATCGACTGTATTGATGTTGATTATTTTAATTGCGATTA
TTTTAATGAGCTTTATCTATCCTATGTTTGCAAATTATGATTTTGGTGATGTAAGTAATATTAATGATTTTTCAAAACGT
TATATCTCACCAGGAGCTGAATACTGGTTTGGAACTGATAAAAATGGTCAGTCATTATTTGATGGTGTTTGGTATGGTGC
AAGGAATTCCATTTTGATTTCTGTTATTGCAACTATGATTAATATGCTTTTAGGCGTGGTTGTTGGTGCTTTATGGGGTG
TTTCTAAAGCTGTTGATAAAGTTATGATTGAAGTCTATAATGTTATTTCAAACTTGCCTCAAATGTTGATTATTATCGTT
TTAACCTACTCTATTGGGGCAGGATTTTGGAATTTGATATTTGCCTTTTGTGTAACAGGTTGGATTGGAATTGCCTACTC
TGTGAGGGTTCAAGTACTCCGTTACCGTGATTTAGAATATAACTTGGCAAGCCAAACGTTAGGGACGCCAGTACATAAAA
TTGCAACTAAGAACTTATTGCCACAGTTGGTTTCTGTTATCGTATCAATGGTATCTTTATTGCTTCCAGCCTATATTTCT
TCTGAAGCATTCCTATCCTTCTTTGGTTTAGGATTGCCGCTTTCAGAACCAAGTCTTGGACGTTTAATTTCTAACTATTC
CTCAAACTTGACAACAAATGCCTATTTATTCTGGATTCCTTTAACCACTCTTATCTTAGTGTCGCTACCTCTTTATATTG
TAGGACAAAACTTAGCTGACGCTAGTGATCCAAGAACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9ZKR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724

Multiple sequence alignment