Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FGK96_RS07965 Genome accession   NZ_LR594036
Coordinates   1645378..1646448 (-) Length   356 a.a.
NCBI ID   WP_138082902.1    Uniprot ID   A0A4U9ZIX3
Organism   Streptococcus porcinus strain NCTC10710     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640378..1651448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS07960 (NCTC10710_01650) amiF 1644462..1645385 (-) 924 WP_138082900.1 ATP-binding cassette domain-containing protein Regulator
  FGK96_RS07965 (NCTC10710_01651) amiE 1645378..1646448 (-) 1071 WP_138082902.1 ABC transporter ATP-binding protein Regulator
  FGK96_RS07970 (NCTC10710_01652) amiD 1646463..1647389 (-) 927 WP_138082904.1 oligopeptide ABC transporter permease OppC Regulator
  FGK96_RS07975 (NCTC10710_01653) amiC 1647389..1648888 (-) 1500 WP_138082906.1 ABC transporter permease Regulator
  FGK96_RS07980 (NCTC10710_01654) amiA3 1648958..1650940 (-) 1983 WP_138082908.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39920.90 Da        Isoelectric Point: 5.7080

>NTDB_id=1127360 FGK96_RS07965 WP_138082902.1 1645378..1646448(-) (amiE) [Streptococcus porcinus strain NCTC10710]
MEENKEIILSAKNVVVEFDVRDRILTAIRDISIDLYEGDVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSIDYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGSQITEVIIKHQKKSRSEAKKLAIDYMTKVGIPDPAKRFGEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIIE
YGTVEEIFYDPRHPYTWSLLSSLPQLADDKGTLFSIPGTPPSLYKPIVGDAFAPRSRYAMKIDFEEACPRFEVSETHWAK
TWLLHPDAPKVQKPEVIQDIHEKISKKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1127360 FGK96_RS07965 WP_138082902.1 1645378..1646448(-) (amiE) [Streptococcus porcinus strain NCTC10710]
ATGGAAGAAAATAAGGAAATAATATTAAGTGCAAAAAATGTTGTTGTTGAGTTTGATGTTCGTGATCGTATTTTAACTGC
TATCCGTGATATCTCAATTGATCTTTATGAAGGGGACGTTTTAGCAGTCGTTGGAGAATCTGGAAGTGGTAAGTCAGTTT
TAACCAAAACTTTCACGGGGATGCTTGAATCAAATGGCCGTGTAGCCTCTGGAAGCATTGATTACCGAGGACAAGAATTA
ACGAAACTCAAGAATCATAAAGACTGGGAAGGTATTCGAGGGGCAAAAATAGCAACAATTTTCCAAGACCCTATGACCAG
CCTTGATCCGATTCAAACAATTGGAAGTCAAATCACTGAAGTGATTATCAAACATCAGAAAAAATCTCGTTCTGAAGCTA
AAAAACTGGCGATTGATTATATGACTAAGGTAGGCATTCCAGATCCTGCTAAGCGTTTTGGGGAATACCCATTTCAGTAT
TCTGGAGGGATGCGGCAACGGATTGTTATAGCGATTGCTTTAGCCTGTCGCCCAGATATTCTGATTTGTGATGAACCAAC
TACAGCTTTAGATGTTACTATTCAAGCTCAAATTATTGAATTGTTAAAATCACTTCAAAAAGAATATCAATTTACCATTA
TTTTTATCACTCACGACCTAGGTGTAGTAGCAAGTATTGCGACGAACGTTGCGGTCATGTATGCAGGAGAAATCATTGAG
TATGGGACGGTAGAAGAAATCTTCTACGATCCACGGCATCCATATACTTGGAGTCTTCTCTCAAGTTTGCCACAATTGGC
TGACGATAAGGGGACTTTATTCTCTATCCCAGGAACACCACCGTCACTGTACAAACCAATAGTTGGAGATGCATTTGCAC
CTCGTTCTCGCTATGCTATGAAAATTGATTTTGAAGAAGCATGTCCAAGGTTTGAAGTCAGTGAAACTCATTGGGCCAAA
ACGTGGCTGCTCCATCCTGATGCACCAAAAGTTCAAAAACCAGAGGTAATTCAAGATATTCATGAAAAAATTTCAAAGAA
ACAAATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9ZIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80.556

100

0.815
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.471

95.506

0.539

Multiple sequence alignment