Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   FGK96_RS07920 Genome accession   NZ_LR594036
Coordinates   1636607..1637158 (-) Length   183 a.a.
NCBI ID   WP_138082898.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1631607..1642158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS07885 (NCTC10710_01635) - 1631938..1632678 (-) 741 WP_138082884.1 class I SAM-dependent DNA methyltransferase -
  FGK96_RS07890 (NCTC10710_01636) rsfS 1632737..1633090 (-) 354 WP_138082886.1 ribosome silencing factor -
  FGK96_RS07895 (NCTC10710_01637) yqeK 1633207..1633800 (-) 594 WP_138082888.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FGK96_RS07900 (NCTC10710_01638) - 1633797..1634429 (-) 633 WP_138082890.1 nicotinate-nucleotide adenylyltransferase -
  FGK96_RS07905 (NCTC10710_01639) yhbY 1634497..1634805 (-) 309 WP_138082892.1 ribosome assembly RNA-binding protein YhbY -
  FGK96_RS07910 (NCTC10710_01640) yqeH 1634866..1635981 (-) 1116 WP_138082894.1 ribosome biogenesis GTPase YqeH -
  FGK96_RS07915 (NCTC10710_01641) - 1635981..1636508 (-) 528 WP_138082896.1 YqeG family HAD IIIA-type phosphatase -
  FGK96_RS07920 (NCTC10710_01642) comX/sigX/comX2/sigX2 1636607..1637158 (-) 552 WP_138082898.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGK96_RS10605 - 1637821..1638302 (+) 482 Protein_1531 transposase -
  FGK96_RS10715 - 1638318..1638446 (+) 129 Protein_1532 IS3 family transposase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22233.99 Da        Isoelectric Point: 10.2387

>NTDB_id=1127358 FGK96_RS07920 WP_138082898.1 1636607..1637158(-) (comX/sigX/comX2/sigX2) [Streptococcus porcinus strain NCTC10710]
MFFFVTFFYNMTIILKEGVTKKSMYNSELNEIFSHVKPIIFKLMRTYFIQLWETDDWLQEGRLVLYNLIESNPELLTNQK
KLFVYFKTKFSSHIKDNIRHQESFKRKLNRLPYQEISEVSHRIPEKGLILDDFVAYQSIIEELKPYLTTKEKNQFKALLR
GERFSGRKSLLRKLKPFFIDFHR

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1127358 FGK96_RS07920 WP_138082898.1 1636607..1637158(-) (comX/sigX/comX2/sigX2) [Streptococcus porcinus strain NCTC10710]
ATGTTCTTTTTTGTAACTTTCTTTTACAATATGACTATTATTTTGAAAGAAGGTGTTACTAAAAAGTCTATGTATAATTC
TGAATTAAATGAAATATTTAGCCATGTAAAGCCGATTATTTTTAAGTTAATGCGGACCTATTTTATTCAACTATGGGAAA
CTGATGATTGGCTACAAGAAGGACGCCTAGTTCTATATAATCTTATTGAAAGTAACCCTGAGTTACTAACCAATCAAAAA
AAGTTATTTGTATATTTTAAAACCAAATTTTCCTCCCACATAAAAGATAACATTCGCCATCAGGAATCGTTTAAACGAAA
ATTGAATCGCTTACCATATCAAGAAATTAGTGAAGTTTCCCATCGGATACCTGAAAAGGGACTTATTCTTGATGATTTTG
TTGCCTATCAGTCAATTATTGAGGAATTGAAGCCGTATTTAACTACTAAAGAAAAAAATCAATTTAAAGCGTTATTAAGA
GGAGAGCGTTTTTCTGGACGAAAATCCTTGTTGCGCAAGTTAAAACCCTTCTTTATAGATTTTCATAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.