Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FGK96_RS06755 Genome accession   NZ_LR594036
Coordinates   1414752..1415462 (-) Length   236 a.a.
NCBI ID   WP_003084933.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1409752..1420462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS06740 (NCTC10710_01398) rnc 1411792..1412484 (-) 693 WP_003085736.1 ribonuclease III -
  FGK96_RS06745 (NCTC10710_01399) vicX 1412588..1413400 (-) 813 WP_138082493.1 MBL fold metallo-hydrolase Regulator
  FGK96_RS06750 (NCTC10710_01400) vicK 1413401..1414759 (-) 1359 WP_138082495.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FGK96_RS06755 (NCTC10710_01401) vicR 1414752..1415462 (-) 711 WP_003084933.1 response regulator YycF Regulator
  FGK96_RS06760 (NCTC10710_01402) - 1415723..1416502 (+) 780 WP_138082497.1 amino acid ABC transporter ATP-binding protein -
  FGK96_RS06765 (NCTC10710_01403) - 1416515..1417333 (+) 819 WP_138082499.1 transporter substrate-binding domain-containing protein -
  FGK96_RS06770 (NCTC10710_01404) - 1417351..1418055 (+) 705 WP_138082501.1 amino acid ABC transporter permease -
  FGK96_RS06775 (NCTC10710_01405) - 1418071..1418718 (+) 648 WP_138082503.1 amino acid ABC transporter permease -
  FGK96_RS06780 (NCTC10710_01406) - 1418770..1419795 (-) 1026 WP_138082505.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27172.12 Da        Isoelectric Point: 4.9981

>NTDB_id=1127353 FGK96_RS06755 WP_003084933.1 1414752..1415462(-) (vicR) [Streptococcus porcinus strain NCTC10710]
MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQHD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1127353 FGK96_RS06755 WP_003084933.1 1414752..1415462(-) (vicR) [Streptococcus porcinus strain NCTC10710]
ATGAAAAAAATCCTCATTGTAGACGATGAAAAACCTATTTCAGATATTATAAAGTTTAATTTGACCAAAGAAGGTTATGA
TATTATGACGGCTTTTGATGGTCGAGAAGCCATTACAATCTTCGAAGAAGATAAACCTGATTTGGTTATTTTGGATTTAA
TGTTACCAGAGATGGATGGTCTTGAAGTTGCAAAAGAAATCCGAAAAACCAGTCATATCCCTATTATTATGCTTTCTGCA
AAAGATAGTGAATTTGATAAGGTTATTGGCTTAGAAATCGGTGCGGATGATTATGTGACAAAACCTTTTTCAAATCGTGA
GCTCCTAGCGCGTGTAAAGGCTCATTTACGACGTACTGAGACAATTGAAACAGCTGTTGCTGAAGAAAATGCTTCTTCAG
GCAATCAAGAATTAACTATCGGTAATCTCCAGATTCTACCAGATGCTTTCTTGGCTAAAAAATATGGCAAGGAAGTTGAA
CTGACACATCGCGAATTTGAATTATTACATCATTTAGCTAATCATATCGGGCAAGTTATGACCCGTGAACATTTATTAGA
AACCGTCTGGGGCTATGATTATTTTGGTGATGTGAGAACTGTTGATGTTACCGTACGACGTTTGAGAGAAAAAATTGAAG
ACACACCAAGCCGTCCTGAATATATTTTGACAAGACGTGGCGTTGGTTATTATATGAAACAGCATGACTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

87.712

100

0.877
  micA Streptococcus pneumoniae Cp1015

77.447

99.576

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.777

98.729

0.432
  covR Streptococcus salivarius strain HSISS4

42.735

99.153

0.424
  scnR Streptococcus mutans UA159

37.768

98.729

0.373

Multiple sequence alignment