Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Regulator |
| Locus tag | FGL04_RS08155 | Genome accession | NZ_LR594035 |
| Coordinates | 1586356..1586616 (-) | Length | 86 a.a. |
| NCBI ID | WP_138068839.1 | Uniprot ID | A0A4U9Z733 |
| Organism | Streptococcus pseudoporcinus strain NCTC5385 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1571995..1589655 | 1586356..1586616 | within | 0 |
| IScluster/Tn | 1587207..1588312 | 1586356..1586616 | flank | 591 |
Gene organization within MGE regions
Location: 1571995..1589655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL04_RS08075 (NCTC5385_01759) | - | 1571995..1573100 (+) | 1106 | WP_138068165.1 | IS3 family transposase | - |
| FGL04_RS08080 | - | 1573145..1573552 (-) | 408 | Protein_1588 | transposase | - |
| FGL04_RS08090 (NCTC5385_01761) | - | 1573570..1573815 (+) | 246 | WP_225247815.1 | hypothetical protein | - |
| FGL04_RS08095 (NCTC5385_01762) | - | 1573975..1574514 (+) | 540 | WP_138068830.1 | SdpI family protein | - |
| FGL04_RS08100 (NCTC5385_01763) | - | 1575112..1575375 (+) | 264 | WP_138068831.1 | hypothetical protein | - |
| FGL04_RS08105 (NCTC5385_01765) | - | 1575428..1576533 (+) | 1106 | WP_138068832.1 | IS3 family transposase | - |
| FGL04_RS08110 (NCTC5385_01766) | - | 1576542..1576724 (-) | 183 | WP_138068833.1 | hypothetical protein | - |
| FGL04_RS08115 (NCTC5385_01767) | - | 1576939..1578603 (-) | 1665 | WP_138068834.1 | ABC transporter permease | - |
| FGL04_RS08120 (NCTC5385_01768) | - | 1578604..1579683 (-) | 1080 | WP_138068835.1 | ABC transporter ATP-binding protein | - |
| FGL04_RS08125 (NCTC5385_01769) | - | 1579693..1580727 (-) | 1035 | WP_138068836.1 | ABC transporter substrate-binding protein | - |
| FGL04_RS08130 (NCTC5385_01770) | - | 1580803..1581399 (-) | 597 | WP_225247816.1 | helix-turn-helix domain-containing protein | - |
| FGL04_RS11100 (NCTC5385_01771) | - | 1581399..1581557 (-) | 159 | WP_225247817.1 | hypothetical protein | - |
| FGL04_RS08135 (NCTC5385_01772) | - | 1581545..1582852 (-) | 1308 | WP_225247818.1 | sensor histidine kinase | - |
| FGL04_RS11105 (NCTC5385_01773) | - | 1582948..1583238 (-) | 291 | WP_225247819.1 | hypothetical protein | - |
| FGL04_RS08140 (NCTC5385_01774) | - | 1584110..1584292 (-) | 183 | WP_138069170.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| FGL04_RS08145 (NCTC5385_01775) | - | 1584311..1584562 (-) | 252 | WP_138068837.1 | Blp family class II bacteriocin | - |
| FGL04_RS08150 (NCTC5385_01776) | - | 1585514..1586035 (-) | 522 | WP_138068838.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| FGL04_RS08155 (NCTC5385_01778) | comB | 1586356..1586616 (-) | 261 | WP_138068839.1 | hypothetical protein | Regulator |
| FGL04_RS08160 (NCTC5385_01779) | - | 1586626..1587123 (-) | 498 | Protein_1605 | ATP-binding cassette domain-containing protein | - |
| FGL04_RS08165 (NCTC5385_01781) | - | 1587207..1588312 (+) | 1106 | WP_138068165.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10168.03 Da Isoelectric Point: 9.8257
>NTDB_id=1127313 FGL04_RS08155 WP_138068839.1 1586356..1586616(-) (comB) [Streptococcus pseudoporcinus strain NCTC5385]
MNEDLLESSEYYQKRYHNFSTLIIIPIFSLLIFLGFFFIFMKKEITIKSVGTIKPVKIIEKIQSTSDNLVIKNNLEENRS
VKKMTF
MNEDLLESSEYYQKRYHNFSTLIIIPIFSLLIFLGFFFIFMKKEITIKSVGTIKPVKIIEKIQSTSDNLVIKNNLEENRS
VKKMTF
Nucleotide
Download Length: 261 bp
>NTDB_id=1127313 FGL04_RS08155 WP_138068839.1 1586356..1586616(-) (comB) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAATGAAGACTTATTAGAAAGTTCCGAATATTATCAAAAAAGATATCATAATTTTTCGACATTGATTATTATACCTAT
TTTTTCACTATTAATCTTTTTAGGATTTTTCTTTATATTTATGAAAAAAGAAATCACTATCAAGTCTGTGGGAACTATTA
AGCCTGTAAAAATTATAGAAAAAATCCAATCAACAAGTGATAATCTCGTCATTAAAAATAATCTAGAAGAAAATAGGAGT
GTGAAAAAAATGACGTTCTAA
ATGAATGAAGACTTATTAGAAAGTTCCGAATATTATCAAAAAAGATATCATAATTTTTCGACATTGATTATTATACCTAT
TTTTTCACTATTAATCTTTTTAGGATTTTTCTTTATATTTATGAAAAAAGAAATCACTATCAAGTCTGTGGGAACTATTA
AGCCTGTAAAAATTATAGAAAAAATCCAATCAACAAGTGATAATCTCGTCATTAAAAATAATCTAGAAGAAAATAGGAGT
GTGAAAAAAATGACGTTCTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Streptococcus mutans UA159 |
51.807 |
96.512 |
0.5 |
| comB | Streptococcus gordonii str. Challis substr. CH1 |
50.602 |
96.512 |
0.488 |
| comB/nlmE | Streptococcus mutans UA159 |
50.602 |
96.512 |
0.488 |
| comB | Streptococcus pneumoniae D39 |
45.783 |
96.512 |
0.442 |
| comB | Streptococcus pneumoniae R6 |
45.783 |
96.512 |
0.442 |
| comB | Streptococcus mitis SK321 |
45.783 |
96.512 |
0.442 |
| comB | Streptococcus mitis NCTC 12261 |
45.783 |
96.512 |
0.442 |
| comB | Streptococcus pneumoniae TIGR4 |
45.783 |
96.512 |
0.442 |
| comB | Streptococcus pneumoniae Rx1 |
45.783 |
96.512 |
0.442 |