Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   LG36_RS06785 Genome accession   NZ_CP009472
Coordinates   1417981..1418631 (+) Length   216 a.a.
NCBI ID   WP_038601231.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412981..1423631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS06760 (LG36_1284) - 1413418..1414164 (-) 747 WP_038601216.1 bifunctional metallophosphatase/5'-nucleotidase -
  LG36_RS06765 (LG36_1285) - 1414278..1415297 (-) 1020 WP_038601219.1 DUF475 domain-containing protein -
  LG36_RS06770 (LG36_1286) - 1415345..1415842 (-) 498 WP_038601222.1 VanZ family protein -
  LG36_RS06775 (LG36_1287) - 1415976..1416605 (-) 630 WP_038601225.1 YigZ family protein -
  LG36_RS06780 (LG36_1288) comFA 1416662..1417984 (+) 1323 WP_038601228.1 DEAD/DEAH box helicase Machinery gene
  LG36_RS06785 (LG36_1289) comFC/cflB 1417981..1418631 (+) 651 WP_038601231.1 ComF family protein Machinery gene
  LG36_RS06790 (LG36_1290) - 1418666..1419244 (-) 579 WP_038601233.1 nucleotidyltransferase family protein -
  LG36_RS06795 (LG36_1291) - 1419258..1419713 (-) 456 WP_038601235.1 diacylglycerol kinase family protein -
  LG36_RS06800 (LG36_1292) ybeY 1419697..1420185 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  LG36_RS06805 (LG36_1293) - 1420337..1420816 (-) 480 WP_038601238.1 NUDIX hydrolase -
  LG36_RS06810 (LG36_1294) - 1420874..1421842 (-) 969 WP_080739863.1 PhoH family protein -
  LG36_RS06815 (LG36_1295) - 1421944..1423476 (-) 1533 WP_038601240.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25419.59 Da        Isoelectric Point: 9.2298

>NTDB_id=112730 LG36_RS06785 WP_038601231.1 1417981..1418631(+) (comFC/cflB) [Lactococcus lactis strain AI06]
MIKCLLCSRNIAQNFLFSELFLLKSPQNLLCSQCQKNFEKIPEAHCPRCCKPNVHEICTDCQNWEKRGYKIRHQAIFHYN
QAMKDYFSLYKFVGDYRLYQIFEPYFKNISPKFPLVPIPISPKRLEERGFNQVTAFLSQENFIELLEKENSVKQSSLNRK
ERLESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=112730 LG36_RS06785 WP_038601231.1 1417981..1418631(+) (comFC/cflB) [Lactococcus lactis strain AI06]
ATGATAAAGTGTTTGCTTTGTTCAAGAAATATTGCTCAAAACTTTCTATTTAGTGAACTTTTCTTACTTAAAAGTCCTCA
AAATCTTTTATGTTCTCAATGTCAAAAAAATTTTGAAAAAATCCCTGAAGCTCACTGTCCTCGCTGCTGCAAGCCAAACG
TCCATGAGATCTGTACTGATTGTCAAAATTGGGAAAAAAGAGGATACAAAATCAGACATCAGGCAATTTTTCACTACAAT
CAAGCAATGAAAGATTATTTTAGTCTGTATAAATTTGTGGGAGATTATCGATTATACCAAATTTTCGAGCCTTATTTTAA
AAATATTTCCCCAAAATTCCCTTTGGTTCCGATTCCTATTTCACCCAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGA
CTGCTTTTCTTTCACAAGAGAATTTTATTGAACTTCTTGAAAAAGAGAATTCCGTCAAACAATCTAGCCTTAATCGAAAA
GAACGATTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATAT
TTATACAACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTC
TCTGCCGTTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(175-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.909

100

0.468
  comFC/cflB Streptococcus mitis SK321

45.455

100

0.463
  comFC/cflB Streptococcus pneumoniae Rx1

44.545

100

0.454
  comFC/cflB Streptococcus pneumoniae R6

44.545

100

0.454
  comFC/cflB Streptococcus pneumoniae D39

44.545

100

0.454
  comFC/cflB Streptococcus pneumoniae TIGR4

44.545

100

0.454
  comFC Lactococcus lactis subsp. cremoris KW2

68.657

62.037

0.426
  comFC Bacillus subtilis subsp. subtilis str. 168

37.179

100

0.403

Multiple sequence alignment