Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FGK99_RS07000 Genome accession   NZ_LR594033
Coordinates   1476723..1477433 (-) Length   236 a.a.
NCBI ID   WP_012515994.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471723..1482433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS06985 (NCTC4675_01418) - 1472631..1474373 (-) 1743 WP_043026181.1 restriction endonuclease FokI C-terminal domain-containing protein -
  FGK99_RS06990 (NCTC4675_01419) vicX 1474565..1475374 (-) 810 WP_042357090.1 MBL fold metallo-hydrolase Regulator
  FGK99_RS06995 (NCTC4675_01420) vicK 1475378..1476730 (-) 1353 WP_012677636.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FGK99_RS07000 (NCTC4675_01421) vicR 1476723..1477433 (-) 711 WP_012515994.1 response regulator YycF Regulator
  FGK99_RS07005 (NCTC4675_01422) - 1477642..1478658 (-) 1017 WP_138119569.1 DUF3114 domain-containing protein -
  FGK99_RS07010 (NCTC4675_01423) - 1478703..1479965 (-) 1263 WP_043040863.1 AMP-binding protein -
  FGK99_RS07015 (NCTC4675_01424) - 1479955..1481070 (-) 1116 WP_138119570.1 acetyl-CoA C-acyltransferase -
  FGK99_RS07020 (NCTC4675_01425) - 1481067..1481606 (-) 540 WP_138119571.1 hypothetical protein -
  FGK99_RS07025 - 1481759..1481887 (-) 129 Protein_1365 aquaporin -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26981.84 Da        Isoelectric Point: 4.9038

>NTDB_id=1127187 FGK99_RS07000 WP_012515994.1 1476723..1477433(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1127187 FGK99_RS07000 WP_012515994.1 1476723..1477433(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAATTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTAACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAGTTTGAATTGCTGCATCATCTGGCAAACCATATCGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTACGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTATCCGTCGCCTGCGCGAAAAAATAGAGG
ATACACCGAGTCGTCCAGAGTATATTTTGACAAGACGTGGTGTTGGGTACTACATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

88.983

100

0.89
  micA Streptococcus pneumoniae Cp1015

78.112

98.729

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.828

98.305

0.441
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

38.034

99.153

0.377

Multiple sequence alignment