Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   FGK99_RS00715 Genome accession   NZ_LR594033
Coordinates   125116..126150 (+) Length   344 a.a.
NCBI ID   WP_229296759.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120116..131150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS00700 (NCTC4675_00141) - 121416..123419 (+) 2004 WP_043024947.1 DUF1430 domain-containing protein -
  FGK99_RS00705 (NCTC4675_00142) - 123421..124089 (+) 669 WP_043024949.1 ATP-binding cassette domain-containing protein -
  FGK99_RS00710 (NCTC4675_00143) comGA/cglA 124245..125183 (+) 939 WP_021320259.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK99_RS00715 (NCTC4675_00144) comYB 125116..126150 (+) 1035 WP_229296759.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK99_RS00720 (NCTC4675_00145) comGC/cglC 126151..126474 (+) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK99_RS00725 (NCTC4675_00146) comGD 126452..126877 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  FGK99_RS00730 (NCTC4675_00147) comGE 126882..127124 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  FGK99_RS00735 (NCTC4675_00148) comYF 127111..127545 (+) 435 WP_012677237.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGK99_RS00740 (NCTC4675_00149) comGG 127523..127885 (+) 363 WP_043024957.1 competence type IV pilus minor pilin ComGG -
  FGK99_RS00750 (NCTC4675_00152) comYH 129379..130332 (+) 954 WP_043024962.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39524.73 Da        Isoelectric Point: 9.3237

>NTDB_id=1127156 FGK99_RS00715 WP_229296759.1 125116..126150(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MISFLQRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLPPVYVTNMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFRKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQQMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1127156 FGK99_RS00715 WP_229296759.1 125116..126150(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGTTTTAATTTAACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGTTACCACCAGTCTATGTTACAAATATGGAAGCAAGCCTATTAAAGGGCAATGGCCTTGCTGATATGCTGGCAGCCTTA
GGCTACTCTGATGCTGTCATGACACAAATTAATCTAGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGTTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCTTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAGAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACAGATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.572

98.547

0.538
  comYB Streptococcus mutans UA159

54.572

98.547

0.538
  comYB Streptococcus gordonii str. Challis substr. CH1

51.765

98.837

0.512
  comGB/cglB Streptococcus mitis NCTC 12261

48.214

97.674

0.471
  comGB/cglB Streptococcus mitis SK321

48.348

96.802

0.468
  comGB/cglB Streptococcus pneumoniae Rx1

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae D39

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae R6

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae TIGR4

48.048

96.802

0.465
  comGB Lactococcus lactis subsp. cremoris KW2

46.313

98.547

0.456

Multiple sequence alignment