Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | FGK99_RS00735 | Genome accession | NZ_LR594033 |
| Coordinates | 127111..127545 (+) | Length | 144 a.a. |
| NCBI ID | WP_012677237.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus strain NCTC4675 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 127931..129273 | 127111..127545 | flank | 386 |
Gene organization within MGE regions
Location: 127111..129273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGK99_RS00735 (NCTC4675_00148) | comYF | 127111..127545 (+) | 435 | WP_012677237.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FGK99_RS00740 (NCTC4675_00149) | comGG | 127523..127885 (+) | 363 | WP_043024957.1 | competence type IV pilus minor pilin ComGG | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16155.70 Da Isoelectric Point: 10.1988
>NTDB_id=1127158 FGK99_RS00735 WP_012677237.1 127111..127545(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG
Nucleotide
Download Length: 435 bp
>NTDB_id=1127158 FGK99_RS00735 WP_012677237.1 127111..127545(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
52.083 |
100 |
0.521 |
| comYF | Streptococcus mutans UA159 |
51.389 |
100 |
0.514 |
| comGF/cglF | Streptococcus mitis SK321 |
50.365 |
95.139 |
0.479 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
49.635 |
95.139 |
0.472 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
47.143 |
97.222 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae D39 |
48.175 |
95.139 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae R6 |
48.175 |
95.139 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
48.175 |
95.139 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
48.175 |
95.139 |
0.458 |