Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   FGK95_RS05700 Genome accession   NZ_LR590625
Coordinates   1108675..1109349 (-) Length   224 a.a.
NCBI ID   WP_003048303.1    Uniprot ID   A0A2D4DMP2
Organism   Streptococcus canis strain B700072     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103675..1114349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS05680 (SAMEA5186854_01139) - 1104838..1105437 (-) 600 WP_138114185.1 class I SAM-dependent methyltransferase -
  FGK95_RS05685 (SAMEA5186854_01140) coaA 1105705..1106625 (+) 921 WP_093998604.1 type I pantothenate kinase -
  FGK95_RS05690 (SAMEA5186854_01141) rpsT 1106679..1106927 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  FGK95_RS05695 (SAMEA5186854_01142) ciaH 1107372..1108682 (-) 1311 WP_093998603.1 sensor histidine kinase Regulator
  FGK95_RS05700 (SAMEA5186854_01143) ciaR 1108675..1109349 (-) 675 WP_003048303.1 response regulator transcription factor Regulator
  FGK95_RS05705 (SAMEA5186854_01144) - 1109552..1112089 (-) 2538 WP_093998602.1 M1 family metallopeptidase -
  FGK95_RS05715 (SAMEA5186854_01145) phoU 1112295..1112948 (-) 654 WP_003048299.1 phosphate signaling complex protein PhoU -
  FGK95_RS05720 (SAMEA5186854_01146) pstB 1113026..1113784 (-) 759 WP_003048297.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25693.73 Da        Isoelectric Point: 4.4740

>NTDB_id=1127113 FGK95_RS05700 WP_003048303.1 1108675..1109349(-) (ciaR) [Streptococcus canis strain B700072]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGDEGLYEAESGIYDLILLDLMLPEKNGFQVLKELREKDIKIPVLIMTA
KESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLSFGNVVVDLRRKEVQVDGEPIELLGKEFDLLVY
ILQNQNVILPKTQIFDRLWGFDSDTTISVVEVYVSKIRKKLKGTGFVDKLQTLRSVGYILKNNE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1127113 FGK95_RS05700 WP_003048303.1 1108675..1109349(-) (ciaR) [Streptococcus canis strain B700072]
ATGATAAAAATATTATTAGTAGAAGATGACTTGAGTTTATCGAATTCCATTTTTGATTTTTTAGATGATTTTGCAGACGT
GATGCAAGTTTTTGATGGCGATGAAGGCTTATATGAAGCAGAAAGTGGTATTTATGATTTGATTTTGTTAGATCTCATGT
TACCAGAAAAAAATGGCTTTCAAGTCTTAAAAGAATTGCGGGAAAAAGATATTAAAATTCCAGTTTTGATTATGACAGCC
AAAGAAAGCATAGATGATAAGGGACATGGGTTTGAACTAGGAGCAGATGATTATCTAACCAAGCCGTTTTACCTTGAAGA
ATTAAAGATGCGCATCCAGGCCCTGTTAAAACGTACGGGCAAATTCACTGATAAAAATCTAAGTTTTGGTAATGTGGTGG
TGGATTTAAGACGAAAAGAAGTTCAAGTCGATGGGGAACCCATTGAGCTATTAGGAAAAGAGTTCGACTTATTGGTTTAC
ATATTGCAAAACCAAAATGTGATCTTACCCAAGACCCAAATTTTTGATCGCTTATGGGGGTTTGACAGCGACACGACAAT
CTCAGTTGTAGAGGTTTATGTCTCTAAAATTAGAAAAAAATTAAAAGGTACTGGTTTTGTTGATAAACTCCAAACCCTGA
GAAGTGTAGGTTATATTCTAAAAAACAATGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D4DMP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

84.685

99.107

0.839
  ciaR Streptococcus pneumoniae D39

84.685

99.107

0.839
  ciaR Streptococcus pneumoniae R6

84.685

99.107

0.839
  ciaR Streptococcus pneumoniae TIGR4

84.685

99.107

0.839
  ciaR Streptococcus mutans UA159

83.333

99.107

0.826
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.222

100

0.384
  covR Streptococcus salivarius strain HSISS4

36.726

100

0.371
  micA Streptococcus pneumoniae Cp1015

34.615

100

0.362
  vicR Streptococcus mutans UA159

34.615

100

0.362

Multiple sequence alignment