Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | LG36_RS00375 | Genome accession | NZ_CP009472 |
| Coordinates | 76629..77888 (-) | Length | 419 a.a. |
| NCBI ID | WP_038598427.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain AI06 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 71629..82888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG36_RS00350 (LG36_0059) | - | 72569..73159 (+) | 591 | WP_038598419.1 | flavin reductase family protein | - |
| LG36_RS00355 (LG36_0060) | rpmG | 73239..73388 (-) | 150 | WP_003132258.1 | 50S ribosomal protein L33 | - |
| LG36_RS00360 (LG36_0061) | rpmF | 73418..73591 (-) | 174 | WP_010905107.1 | 50S ribosomal protein L32 | - |
| LG36_RS00365 (LG36_0062) | - | 73955..75736 (+) | 1782 | WP_038598423.1 | heavy metal translocating P-type ATPase | - |
| LG36_RS00370 (LG36_0063) | spo0J | 75789..76574 (-) | 786 | WP_038598425.1 | ParB/RepB/Spo0J family partition protein | Regulator |
| LG36_RS00375 (LG36_0064) | rarA | 76629..77888 (-) | 1260 | WP_038598427.1 | replication-associated recombination protein A | Machinery gene |
| LG36_RS00380 (LG36_0065) | - | 77932..78420 (-) | 489 | WP_038598431.1 | GNAT family N-acetyltransferase | - |
| LG36_RS00385 (LG36_0066) | - | 78573..79040 (+) | 468 | WP_029344682.1 | DUF3013 family protein | - |
| LG36_RS00390 (LG36_0067) | - | 79070..80623 (+) | 1554 | WP_038598438.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| LG36_RS00395 (LG36_0068) | - | 80732..81016 (+) | 285 | WP_010905114.1 | hypothetical protein | - |
| LG36_RS00400 (LG36_0069) | - | 81054..81542 (+) | 489 | WP_038598441.1 | YdeI/OmpD-associated family protein | - |
| LG36_RS00405 (LG36_0070) | prmA | 81559..82512 (+) | 954 | WP_038598443.1 | 50S ribosomal protein L11 methyltransferase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 46794.09 Da Isoelectric Point: 5.8864
>NTDB_id=112698 LG36_RS00375 WP_038598427.1 76629..77888(-) (rarA) [Lactococcus lactis strain AI06]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETHLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLSRRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPAHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETHLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLSRRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPAHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
Nucleotide
Download Length: 1260 bp
>NTDB_id=112698 LG36_RS00375 WP_038598427.1 76629..77888(-) (rarA) [Lactococcus lactis strain AI06]
ATGGCACAAAATCTTGCAAGACGAATGAGACCCCGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCACCTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGATACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAGGATTTAGAATTTGCTGTAAAC
CTTAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGAAGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGCGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAATGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTATCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAACGCAGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
GGCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGACTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA
ATGGCACAAAATCTTGCAAGACGAATGAGACCCCGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCACCTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGATACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAGGATTTAGAATTTGCTGTAAAC
CTTAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGAAGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGCGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAATGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTATCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAACGCAGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
GGCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGACTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.005 |
100 |
0.594 |