Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LG36_RS00370 Genome accession   NZ_CP009472
Coordinates   75789..76574 (-) Length   261 a.a.
NCBI ID   WP_038598425.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 70789..81574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS00345 (LG36_0058) - 71389..72558 (+) 1170 WP_015425630.1 ring-cleaving dioxygenase -
  LG36_RS00350 (LG36_0059) - 72569..73159 (+) 591 WP_038598419.1 flavin reductase family protein -
  LG36_RS00355 (LG36_0060) rpmG 73239..73388 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LG36_RS00360 (LG36_0061) rpmF 73418..73591 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LG36_RS00365 (LG36_0062) - 73955..75736 (+) 1782 WP_038598423.1 heavy metal translocating P-type ATPase -
  LG36_RS00370 (LG36_0063) spo0J 75789..76574 (-) 786 WP_038598425.1 ParB/RepB/Spo0J family partition protein Regulator
  LG36_RS00375 (LG36_0064) rarA 76629..77888 (-) 1260 WP_038598427.1 replication-associated recombination protein A Machinery gene
  LG36_RS00380 (LG36_0065) - 77932..78420 (-) 489 WP_038598431.1 GNAT family N-acetyltransferase -
  LG36_RS00385 (LG36_0066) - 78573..79040 (+) 468 WP_029344682.1 DUF3013 family protein -
  LG36_RS00390 (LG36_0067) - 79070..80623 (+) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  LG36_RS00395 (LG36_0068) - 80732..81016 (+) 285 WP_010905114.1 hypothetical protein -
  LG36_RS00400 (LG36_0069) - 81054..81542 (+) 489 WP_038598441.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29791.62 Da        Isoelectric Point: 9.5731

>NTDB_id=112697 LG36_RS00370 WP_038598425.1 75789..76574(-) (spo0J) [Lactococcus lactis strain AI06]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKFTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLTKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=112697 LG36_RS00370 WP_038598425.1 75789..76574(-) (spo0J) [Lactococcus lactis strain AI06]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAGATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTTGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAACTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAATTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGATGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTAACTAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471

Multiple sequence alignment