Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   FGK81_RS08060 Genome accession   NZ_LR590466
Coordinates   1569438..1569989 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8193     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564438..1574989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK81_RS08025 (NCTC8193_01594) - 1564441..1565184 (-) 744 WP_011889139.1 class I SAM-dependent DNA methyltransferase -
  FGK81_RS08030 (NCTC8193_01595) rsfS 1565232..1565585 (-) 354 WP_011017339.1 ribosome silencing factor -
  FGK81_RS08035 (NCTC8193_01596) yqeK 1565609..1566202 (-) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FGK81_RS08040 (NCTC8193_01597) - 1566199..1566831 (-) 633 WP_011017338.1 nicotinate-nucleotide adenylyltransferase -
  FGK81_RS08045 (NCTC8193_01598) yhbY 1566900..1567208 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  FGK81_RS08050 (NCTC8193_01599) yqeH 1567234..1568352 (-) 1119 WP_002985994.1 ribosome biogenesis GTPase YqeH -
  FGK81_RS08055 (NCTC8193_01600) - 1568352..1568879 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  FGK81_RS08060 (NCTC8193_01601) comX/sigX/comX2/sigX2 1569438..1569989 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1126796 FGK81_RS08060 WP_010921894.1 1569438..1569989(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC8193]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1126796 FGK81_RS08060 WP_010921894.1 1569438..1569989(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC8193]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.