Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | E0F39_RS03835 | Genome accession | NZ_LR216060 |
| Coordinates | 707273..707863 (+) | Length | 196 a.a. |
| NCBI ID | WP_000613477.1 | Uniprot ID | A0A064BX72 |
| Organism | Streptococcus pneumoniae strain GPSC47 substr. ST315 | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 705338..715899 | 707273..707863 | within | 0 |
Gene organization within MGE regions
Location: 705338..715899
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0F39_RS03820 (SAMEA3713867_00714) | - | 705338..705895 (+) | 558 | WP_000004139.1 | TetR/AcrR family transcriptional regulator | - |
| E0F39_RS03825 (SAMEA3713867_00715) | - | 705914..706381 (+) | 468 | WP_000136976.1 | deoxycytidylate deaminase | - |
| E0F39_RS03830 (SAMEA3713867_00716) | upp | 706470..707099 (+) | 630 | WP_001812010.1 | uracil phosphoribosyltransferase | - |
| E0F39_RS03835 (SAMEA3713867_00717) | clpP | 707273..707863 (+) | 591 | WP_000613477.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| E0F39_RS03845 (SAMEA3713867_00718) | - | 707942..708190 (+) | 249 | WP_000462126.1 | YlbG family protein | - |
| E0F39_RS03850 (SAMEA3713867_00719) | - | 708291..709451 (+) | 1161 | WP_000726149.1 | ABC transporter substrate-binding protein | - |
| E0F39_RS03855 (SAMEA3713867_00720) | - | 709719..710588 (+) | 870 | WP_001865036.1 | branched-chain amino acid ABC transporter permease | - |
| E0F39_RS03860 (SAMEA3713867_00721) | - | 710592..711548 (+) | 957 | WP_000662293.1 | branched-chain amino acid ABC transporter permease | - |
| E0F39_RS03865 (SAMEA3713867_00722) | - | 711548..712312 (+) | 765 | WP_001186003.1 | ABC transporter ATP-binding protein | - |
| E0F39_RS03870 (SAMEA3713867_00723) | - | 712312..713022 (+) | 711 | WP_000062219.1 | ABC transporter ATP-binding protein | - |
| E0F39_RS03875 (SAMEA3713867_00724) | - | 713330..713986 (+) | 657 | WP_000268677.1 | CBS domain-containing protein | - |
| E0F39_RS03880 (SAMEA3713867_00725) | prfB | 714094..715189 (+) | 1096 | WP_115264891.1 | peptide chain release factor 2 | - |
| E0F39_RS03885 (SAMEA3713867_00726) | ftsE | 715207..715899 (+) | 693 | WP_000022265.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21358.36 Da Isoelectric Point: 4.4910
>NTDB_id=1126177 E0F39_RS03835 WP_000613477.1 707273..707863(+) (clpP) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=1126177 E0F39_RS03835 WP_000613477.1 707273..707863(+) (clpP) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGAACAGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGAACAGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| clpP | Streptococcus thermophilus LMG 18311 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus thermophilus LMD-9 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus pyogenes JRS4 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus pyogenes MGAS315 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus mutans UA159 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.128 |
99.49 |
0.847 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
84.615 |
99.49 |
0.842 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.031 |
98.469 |
0.571 |