Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   EL147_RS09230 Genome accession   NZ_LR134341
Coordinates   1869109..1869819 (+) Length   236 a.a.
NCBI ID   WP_007893534.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864109..1874819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS09205 (NCTC13786_01847) - 1864516..1865535 (+) 1020 WP_007893509.1 DUF3114 domain-containing protein -
  EL147_RS09210 (NCTC13786_01848) - 1865855..1866502 (-) 648 WP_007893505.1 amino acid ABC transporter permease -
  EL147_RS09215 (NCTC13786_01849) - 1866518..1867222 (-) 705 WP_007893466.1 amino acid ABC transporter permease -
  EL147_RS09220 (NCTC13786_01850) - 1867240..1868058 (-) 819 WP_007893479.1 transporter substrate-binding domain-containing protein -
  EL147_RS09225 (NCTC13786_01851) - 1868071..1868850 (-) 780 WP_007893520.1 amino acid ABC transporter ATP-binding protein -
  EL147_RS09230 (NCTC13786_01852) vicR 1869109..1869819 (+) 711 WP_007893534.1 response regulator YycF Regulator
  EL147_RS09235 (NCTC13786_01853) vicK 1869812..1871170 (+) 1359 WP_007893475.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL147_RS09240 (NCTC13786_01854) vicX 1871171..1871983 (+) 813 WP_007893495.1 MBL fold metallo-hydrolase Regulator
  EL147_RS09245 (NCTC13786_01855) rnc 1872089..1872781 (+) 693 WP_007893497.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27041.97 Da        Isoelectric Point: 5.1078

>NTDB_id=1122032 EL147_RS09230 WP_007893534.1 1869109..1869819(+) (vicR) [Streptococcus pseudoporcinus strain NCTC13786]
MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQHD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1122032 EL147_RS09230 WP_007893534.1 1869109..1869819(+) (vicR) [Streptococcus pseudoporcinus strain NCTC13786]
ATGAAAAAAATCCTCATTGTAGACGATGAAAAACCTATTTCAGACATTATAAAGTTTAATTTGACCAAAGAAGGTTATGA
TATCATGACAGCTTTTGATGGTCGAGAAGCCATCGCAGCCTTTGAAGAAGGTAAACCTGATTTGGTTATTTTGGATTTGA
TGTTACCAGAGATGGATGGTCTTGAAGTTGCAAAAGAAATTCGAAAAACCAGTCATATCCCTATAATTATGCTTTCTGCC
AAAGATAGTGAATTTGATAAGGTCATTGGTTTAGAGATTGGTGCGGACGATTATGTAACAAAACCTTTTTCAAATCGTGA
GCTCCTAGCGCGTGTTAAAGCCCATTTGCGACGCACCGAAACGATTGAAACAGCTGTTGCTGAAGAAAATGCTTCCTCAG
GAAACCAAGAATTAACTATCGGTAATCTCCAGATTCTGCCAGATGCTTTCTTGGCTAAAAAATATGGTAAGGAAGTTGAA
TTGACACATCGCGAATTTGAATTATTACACCATTTAGCTAATCATATCGGGCAAGTCATGACCCGTGAACATTTATTAGA
AACGGTCTGGGGCTATGATTATTTTGGTGATGTGAGAACTGTTGATGTTACCGTACGACGTTTGAGAGAAAAAATTGAAG
ATACACCAAGCCGTCCTGAATATATTTTGACAAGACGTGGCGTTGGCTATTATATGAAACAGCATGACTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

87.712

100

0.877
  micA Streptococcus pneumoniae Cp1015

77.447

99.576

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.777

98.729

0.432
  covR Streptococcus salivarius strain HSISS4

42.735

99.153

0.424
  scnR Streptococcus mutans UA159

37.768

98.729

0.373

Multiple sequence alignment