Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   EL147_RS09235 Genome accession   NZ_LR134341
Coordinates   1869812..1871170 (+) Length   452 a.a.
NCBI ID   WP_007893475.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864812..1876170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS09210 (NCTC13786_01848) - 1865855..1866502 (-) 648 WP_007893505.1 amino acid ABC transporter permease -
  EL147_RS09215 (NCTC13786_01849) - 1866518..1867222 (-) 705 WP_007893466.1 amino acid ABC transporter permease -
  EL147_RS09220 (NCTC13786_01850) - 1867240..1868058 (-) 819 WP_007893479.1 transporter substrate-binding domain-containing protein -
  EL147_RS09225 (NCTC13786_01851) - 1868071..1868850 (-) 780 WP_007893520.1 amino acid ABC transporter ATP-binding protein -
  EL147_RS09230 (NCTC13786_01852) vicR 1869109..1869819 (+) 711 WP_007893534.1 response regulator YycF Regulator
  EL147_RS09235 (NCTC13786_01853) vicK 1869812..1871170 (+) 1359 WP_007893475.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL147_RS09240 (NCTC13786_01854) vicX 1871171..1871983 (+) 813 WP_007893495.1 MBL fold metallo-hydrolase Regulator
  EL147_RS09245 (NCTC13786_01855) rnc 1872089..1872781 (+) 693 WP_007893497.1 ribonuclease III -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 51720.20 Da        Isoelectric Point: 5.1789

>NTDB_id=1122033 EL147_RS09235 WP_007893475.1 1869812..1871170(+) (vicK) [Streptococcus pseudoporcinus strain NCTC13786]
MTRDIVGNLSLFELAILFLLVFVAIYFIYLAVRDYRNAKIIRQMSHKIRDLINGRYTDDINSKADIELIDLSEQLNDLSD
VFRLTHENLAQEKNRLASILAYMSDGVLATDRTGQIMMINETAQKQMNISREEALKKNITDLLGSDSPYTYRELVSQTPI
VTLNRRDETGEFITLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EDIAPSFIKVSLDETNRMMRMISDLLNLSRIDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVAGKTYEIIRDYPIKS
IWLEIDNDKMTQVIENILNNAIKYSPDGGKIRVKMKTTESQLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTG
LGLAIAKEIVKQHKGFIWAKSDYGKGSTFTIVLPYDKDVMSDDVDEWEDDID

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1122033 EL147_RS09235 WP_007893475.1 1869812..1871170(+) (vicK) [Streptococcus pseudoporcinus strain NCTC13786]
ATGACTAGAGACATCGTTGGAAATTTATCTTTATTTGAATTAGCAATACTCTTCTTATTGGTATTTGTTGCTATCTATTT
TATTTATTTAGCTGTTCGCGACTATCGTAATGCTAAAATTATCAGACAGATGAGTCACAAGATTCGTGATTTGATTAACG
GTCGTTATACTGATGATATTAATAGCAAAGCAGATATTGAACTGATTGACTTATCAGAACAACTTAATGATTTGTCAGAT
GTTTTTCGTCTCACTCATGAGAATTTAGCGCAGGAGAAGAATCGTCTGGCTAGTATTTTGGCTTATATGAGTGATGGTGT
TTTAGCGACTGACCGGACTGGTCAGATTATGATGATTAATGAAACAGCACAAAAACAGATGAACATCAGTCGTGAGGAAG
CTCTTAAAAAAAATATCACCGATCTCTTGGGGAGTGACTCTCCTTATACTTATAGAGAATTAGTGTCCCAAACACCAATT
GTTACCCTAAACCGTCGTGATGAGACAGGTGAATTTATCACACTTCGCTTACGCTTTGCTTTGAATCGACGTGAAAGTGG
CTTTATTTCAGGCTTGGTTGTCGTATTGCACGACACCACTGAACAAGAAAAAGAAGAAAGGGAGCGCCGTCTCTTCGTTT
CCAACGTTAGCCATGAGCTAAGAACCCCTTTGACTTCTGTTAAATCTTATCTAGAAGCGCTTGATGAAGGAGCTTTAAAA
GAAGATATTGCTCCAAGTTTTATCAAAGTGTCGCTTGATGAAACCAACCGTATGATGCGGATGATTTCTGATCTTTTGAA
TTTATCACGAATTGACAACCAAGTGACAGCCTTAGCTGTTGAAATGACTAATTTTACAGCTTTTATGACGTCAATCTTAA
ATCGTTTTGATTTGGTTCGTAATCAAAATACGGTTGCTGGCAAAACTTATGAAATCATTCGTGATTATCCCATAAAGTCA
ATTTGGTTAGAAATTGATAATGATAAGATGACCCAGGTTATTGAAAATATCCTAAATAATGCTATTAAATACTCCCCTGA
TGGTGGTAAAATCCGAGTTAAAATGAAGACTACGGAGAGTCAGCTAATTATTTCCATTTCCGACCAAGGTTTGGGGATTC
CTAAAAAAGATCTCCCTTTAATCTTCGACCGTTTTTATCGTGTTGATAAAGCACGCAGTCGGGCACAGGGTGGAACAGGG
CTGGGATTAGCTATTGCAAAAGAGATTGTTAAACAACATAAGGGCTTTATTTGGGCTAAAAGTGATTATGGTAAAGGTTC
GACCTTTACAATTGTTCTTCCTTATGACAAAGATGTAATGTCAGATGATGTTGATGAATGGGAGGACGATATTGATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(95-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

72.947

91.593

0.668
  micB Streptococcus pneumoniae Cp1015

66.353

94.027

0.624

Multiple sequence alignment