Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL147_RS09240 Genome accession   NZ_LR134341
Coordinates   1871171..1871983 (+) Length   270 a.a.
NCBI ID   WP_007893495.1    Uniprot ID   A0A4U9XIF8
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866171..1876983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS09215 (NCTC13786_01849) - 1866518..1867222 (-) 705 WP_007893466.1 amino acid ABC transporter permease -
  EL147_RS09220 (NCTC13786_01850) - 1867240..1868058 (-) 819 WP_007893479.1 transporter substrate-binding domain-containing protein -
  EL147_RS09225 (NCTC13786_01851) - 1868071..1868850 (-) 780 WP_007893520.1 amino acid ABC transporter ATP-binding protein -
  EL147_RS09230 (NCTC13786_01852) vicR 1869109..1869819 (+) 711 WP_007893534.1 response regulator YycF Regulator
  EL147_RS09235 (NCTC13786_01853) vicK 1869812..1871170 (+) 1359 WP_007893475.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL147_RS09240 (NCTC13786_01854) vicX 1871171..1871983 (+) 813 WP_007893495.1 MBL fold metallo-hydrolase Regulator
  EL147_RS09245 (NCTC13786_01855) rnc 1872089..1872781 (+) 693 WP_007893497.1 ribonuclease III -
  EL147_RS09250 (NCTC13786_01856) smc 1872782..1876327 (+) 3546 WP_007893528.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30324.39 Da        Isoelectric Point: 5.5800

>NTDB_id=1122034 EL147_RS09240 WP_007893495.1 1871171..1871983(+) (vicX) [Streptococcus pseudoporcinus strain NCTC13786]
MLEQEGFKYSILASGSTGNSFYLETPQKRILVDAGLTGKKIISLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARKYHL
DIYANQKTWQIIDDRNMIGKIDTTQKYIFDRDKVMTFGDLDIESFGVSHDAADPQFYRFMKDNKSFVMLTDTGYVSDRMS
GIISNADAYLIESNHDIEILRSGSYPWSLKQRILSDKGHLSNEDGAGAMIRSIGNKTKKIFLGHLSKENNIKELAHMTME
NQLAMADLAVGTDFKVYDTSPDTACSLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1122034 EL147_RS09240 WP_007893495.1 1871171..1871983(+) (vicX) [Streptococcus pseudoporcinus strain NCTC13786]
ATGCTAGAGCAAGAAGGATTTAAATATAGTATTTTAGCATCGGGGTCTACTGGTAACAGTTTCTATTTAGAAACGCCTCA
AAAACGTATCCTTGTTGATGCAGGATTGACTGGTAAAAAAATAATCAGTCTCTTAGCAGAAATAGATCGGAAGCCAGAAG
ATTTAGATGCCATATTAATTACACATGAACATTCTGATCATATAAAAGGAGTCGGTGTTCTTGCTCGTAAGTATCATCTT
GATATTTATGCTAATCAAAAAACGTGGCAGATTATTGATGATAGAAATATGATTGGAAAAATTGATACGACTCAAAAATA
TATTTTTGACCGTGATAAGGTCATGACCTTTGGGGATCTTGATATTGAAAGTTTTGGCGTCAGTCACGATGCGGCAGACC
CTCAATTTTATCGTTTTATGAAAGATAATAAATCATTCGTTATGTTAACAGATACTGGATATGTGAGTGATCGTATGTCT
GGCATTATTAGTAATGCAGATGCTTATTTGATTGAATCAAATCATGATATTGAGATCTTAAGATCGGGATCTTATCCATG
GAGTTTAAAACAAAGGATTTTATCTGATAAGGGCCACTTGTCAAATGAAGATGGTGCTGGCGCTATGATTCGTAGCATCG
GCAATAAGACTAAGAAAATTTTCCTTGGACACCTGAGTAAGGAAAATAATATCAAAGAATTAGCTCACATGACAATGGAA
AACCAACTAGCGATGGCAGATTTAGCAGTAGGAACGGATTTTAAAGTATATGACACATCACCAGATACTGCTTGTTCCTT
AACAGATATTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(16-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9XIF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

99.63

0.763

Multiple sequence alignment