Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL147_RS03985 Genome accession   NZ_LR134341
Coordinates   832731..834713 (-) Length   660 a.a.
NCBI ID   WP_007893619.1    Uniprot ID   G5K922
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 827731..839713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS03965 (NCTC13786_00793) amiF 828241..829164 (-) 924 WP_007893669.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03970 (NCTC13786_00794) amiE 829157..830227 (-) 1071 WP_007893602.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03975 (NCTC13786_00795) amiD 830236..831162 (-) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  EL147_RS03980 (NCTC13786_00796) amiC 831162..832661 (-) 1500 WP_007893616.1 ABC transporter permease Regulator
  EL147_RS03985 (NCTC13786_00797) amiA3 832731..834713 (-) 1983 WP_007893619.1 peptide ABC transporter substrate-binding protein Regulator
  EL147_RS03990 (NCTC13786_00798) pbp3 835038..836276 (+) 1239 WP_007893667.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL147_RS03995 (NCTC13786_00799) pbp3 836323..837537 (+) 1215 WP_007893621.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL147_RS04000 (NCTC13786_00800) - 837654..838796 (+) 1143 WP_408646531.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73449.93 Da        Isoelectric Point: 7.1279

>NTDB_id=1122000 EL147_RS03985 WP_007893619.1 832731..834713(-) (amiA3) [Streptococcus pseudoporcinus strain NCTC13786]
MKNGKWLAAIGIAILSVSTLAACSNGSGKDSKSKNYSYVYATDPDTLDYLVSGRSTTSEIIQNSVDGLMEYDNMGNLVPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYANVTANDFVTGLKHAADKGSDALYLVQDSIKGLGDYVEGKTKDFSTVG
VKAIDKNTLQYTLNKPESFWNSKLTYGILSPVNADFLKSKGKDFGKASDPSSILYNGPFLISSLTSKSSIEFVKNENYWD
KKDVHVDGVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYKKVKKNYGDNIIYAPQKSNTYYATFNLNRTAYDHTKK
TSDKQKDDTRKAVLNKDFRQALTFGFNRKSYTAQTAGEDGAGKSLRNTLVPPAFVQIDGHDFGKTVEKELANYGEQWKDV
NLADAQDGLYNPEKAKKQMDKAKKALEAQGVQFPIHLDMPQDQTASGLMQQAQSMKQSIEKSLGKENVVIDIIELNTDTY
NNITYMAETTNQQDWDLSTASGWSPDYADPSSYLDIFNPTMASAQTKFIGLNPIKDVAIANEAGLEEFTRLDGDAGHITD
NQDERFKKYAQAQAALTDSAVYIPTYSLGGTPSITKVVPFTGAFGWSGNKSDASTFYKYMKLQDKPVTSKDYNKALKKWK
KDKEKSNEKYAESLEKHIEK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1122000 EL147_RS03985 WP_007893619.1 832731..834713(-) (amiA3) [Streptococcus pseudoporcinus strain NCTC13786]
ATGAAAAATGGCAAGTGGTTGGCTGCTATTGGGATAGCGATTTTATCAGTCTCTACCTTAGCAGCTTGTAGCAATGGATC
AGGCAAAGACAGTAAGTCAAAAAACTATAGTTACGTCTATGCAACAGATCCAGATACTTTAGATTATTTAGTTTCAGGTC
GTTCAACAACAAGTGAAATCATTCAAAATAGTGTCGATGGCTTAATGGAATATGATAACATGGGGAATTTGGTTCCCTCA
GTTGCTAAAAGCTGGACAGTATCTAAAGATGGCTTAACATACACCTATAAAATTCGTAAGGATTCAAAATGGTACACTGC
TGATGGTGAAGAGTATGCAAACGTTACAGCAAATGATTTTGTAACTGGTTTGAAACATGCTGCTGACAAGGGTTCAGATG
CTCTTTACCTTGTACAAGATTCTATAAAAGGTTTGGGAGATTACGTTGAAGGAAAAACCAAAGACTTCTCGACTGTAGGC
GTGAAAGCTATTGACAAAAATACTCTTCAATATACGCTTAATAAACCTGAAAGCTTCTGGAATTCAAAATTAACATATGG
GATTCTATCTCCTGTTAATGCTGACTTCTTAAAATCTAAAGGTAAGGATTTTGGTAAAGCATCAGATCCATCTTCTATCT
TATATAATGGGCCATTCTTGATTTCATCATTGACAAGCAAGTCATCTATTGAATTTGTCAAAAATGAAAATTATTGGGAT
AAAAAAGATGTGCATGTTGATGGTGTACAGTTAACCTATTATGATGGTCAAGATCAAGAATCACTATTTAGAAATTTTGA
TAAAGGTGCCTATTCTGCAGCACGTCTTTTCCCGACAACACCTTCTTATAAAAAAGTTAAGAAAAACTATGGCGACAATA
TTATCTATGCGCCACAAAAATCAAATACCTATTATGCTACATTTAATTTGAATCGCACAGCTTATGACCATACTAAAAAA
ACAAGTGATAAACAAAAAGATGATACCCGTAAGGCTGTTTTAAATAAAGATTTCCGTCAAGCATTAACATTTGGATTTAA
TAGAAAATCATATACTGCTCAGACTGCTGGTGAAGATGGAGCAGGTAAATCTCTTCGGAATACTCTAGTTCCACCTGCAT
TTGTTCAAATTGATGGTCACGATTTTGGCAAAACGGTTGAAAAAGAGCTAGCTAATTATGGGGAACAGTGGAAAGATGTT
AATCTTGCTGATGCGCAAGATGGCCTCTATAATCCAGAGAAAGCTAAAAAGCAAATGGACAAAGCTAAAAAAGCTTTGGA
AGCTCAAGGAGTACAATTCCCAATCCACCTTGATATGCCACAAGATCAAACTGCATCTGGCTTAATGCAACAAGCTCAAT
CAATGAAACAATCTATTGAAAAGTCTCTTGGGAAAGAAAACGTTGTGATTGATATTATTGAGCTCAATACTGATACATAT
AACAATATCACTTATATGGCTGAAACAACAAATCAACAAGACTGGGATCTCTCAACTGCCTCAGGTTGGAGCCCAGACTA
TGCAGATCCGTCTTCTTATCTTGATATATTCAACCCAACAATGGCAAGTGCTCAAACAAAATTCATTGGCCTTAATCCAA
TCAAAGACGTGGCTATTGCTAATGAGGCAGGTCTAGAAGAATTTACAAGACTAGATGGTGACGCAGGTCACATTACGGAT
AATCAGGATGAACGATTTAAAAAATATGCCCAAGCCCAAGCTGCTTTAACGGATTCAGCCGTTTATATTCCAACTTACTC
ACTAGGTGGAACCCCTTCAATCACTAAAGTGGTACCATTTACAGGAGCATTTGGCTGGTCTGGTAATAAATCTGATGCAT
CTACATTTTATAAATATATGAAACTTCAAGATAAACCCGTAACGTCAAAAGATTATAATAAAGCTTTGAAAAAATGGAAA
AAAGATAAAGAAAAATCTAATGAAAAATATGCTGAGTCGCTAGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K922

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

54.242

100

0.542
  amiA3 Streptococcus thermophilus LMD-9

54.091

100

0.541
  amiA Streptococcus salivarius strain HSISS4

54.091

100

0.541

Multiple sequence alignment