Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL147_RS03975 Genome accession   NZ_LR134341
Coordinates   830236..831162 (-) Length   308 a.a.
NCBI ID   WP_007893576.1    Uniprot ID   A0A4U9XHU4
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 825236..836162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS03965 (NCTC13786_00793) amiF 828241..829164 (-) 924 WP_007893669.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03970 (NCTC13786_00794) amiE 829157..830227 (-) 1071 WP_007893602.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03975 (NCTC13786_00795) amiD 830236..831162 (-) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  EL147_RS03980 (NCTC13786_00796) amiC 831162..832661 (-) 1500 WP_007893616.1 ABC transporter permease Regulator
  EL147_RS03985 (NCTC13786_00797) amiA3 832731..834713 (-) 1983 WP_007893619.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34457.20 Da        Isoelectric Point: 6.4720

>NTDB_id=1121998 EL147_RS03975 WP_007893576.1 830236..831162(-) (amiD) [Streptococcus pseudoporcinus strain NCTC13786]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVFMLIILIAIILMSFIYPIFANYDFGDVSNINDFSKR
YISPSAEYWFGTDQNGQSLFDGVWYGARNSILISVIATVINMLLGVVIGALWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSVRVQVLRYRDLEYNLASQTLGTPTHKIATKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1121998 EL147_RS03975 WP_007893576.1 830236..831162(-) (amiD) [Streptococcus pseudoporcinus strain NCTC13786]
ATGGCAACAATTGACAAAAGTAAATTTGAGTTTGTTGAACTCGACAGTTATGCATCAGAAGTCATTGATGCCCCAGCTTA
CTCATACTGGAAATCGGTTTTTCGTCAGTTCTTTTCACGTAAATCAACGGTGTTTATGTTGATTATTCTTATTGCGATTA
TTTTAATGAGTTTTATCTACCCTATATTTGCAAATTATGATTTTGGTGATGTGAGTAACATTAATGATTTTTCAAAACGT
TATATCTCACCAAGTGCTGAATATTGGTTTGGAACTGATCAAAATGGACAATCATTATTTGATGGTGTTTGGTATGGTGC
CAGAAATTCTATTTTGATTTCTGTCATTGCGACTGTGATTAATATGCTTTTGGGTGTGGTTATTGGTGCTTTGTGGGGTG
TTTCCAAGGCAGTTGATAAAGTGATGATTGAAGTCTATAACGTTATTTCGAATTTGCCTCAAATGTTGATTATTATCGTT
TTAACCTACTCTATTGGAGCAGGATTTTGGAATTTGATATTCGCCTTCTGTGTGACAGGCTGGATTGGAATTGCCTACTC
TGTGAGGGTTCAAGTACTCCGCTACCGCGATTTAGAATATAACCTGGCAAGCCAAACATTAGGAACGCCAACACATAAAA
TTGCAACTAAGAACTTATTGCCACAGTTGGTTTCTGTTATCGTATCAATGGTATCCTTGTTGCTTCCGGCCTATATTTCT
TCAGAAGCCTTCCTTTCTTTCTTTGGTTTAGGTTTACCACTTTCAGAACCAAGTCTTGGACGTTTAATTTCTAATTATTC
TTCAAATTTAACAACTAATGCATATTTATTCTGGATTCCTCTAACCACTCTTATTTTGGTGTCTTTACCTCTTTATATTG
TAGGGCAAAACTTAGCTGATGCTAGTGATCCAAGAACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9XHU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.078

100

0.721
  amiD Streptococcus thermophilus LMD-9

72.078

100

0.721

Multiple sequence alignment