Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   EL147_RS03970 Genome accession   NZ_LR134341
Coordinates   829157..830227 (-) Length   356 a.a.
NCBI ID   WP_007893602.1    Uniprot ID   G5K919
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 824157..835227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS03965 (NCTC13786_00793) amiF 828241..829164 (-) 924 WP_007893669.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03970 (NCTC13786_00794) amiE 829157..830227 (-) 1071 WP_007893602.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03975 (NCTC13786_00795) amiD 830236..831162 (-) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  EL147_RS03980 (NCTC13786_00796) amiC 831162..832661 (-) 1500 WP_007893616.1 ABC transporter permease Regulator
  EL147_RS03985 (NCTC13786_00797) amiA3 832731..834713 (-) 1983 WP_007893619.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40000.00 Da        Isoelectric Point: 6.5074

>NTDB_id=1121997 EL147_RS03970 WP_007893602.1 829157..830227(-) (amiE) [Streptococcus pseudoporcinus strain NCTC13786]
MEENKEIILSAKNVVVEFDVRDRTLTAIRDISIDLYEGDVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSIDYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGSQITEVIIKHQKKSHSEAKKMAIDYMTKVGIPNPDKRFKEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIIE
YGRVEDIFYDPRHPYTWSLLSSLPQLADDKGVLFSIPGTPPSLYKPIVGDAFAPRSRYAMKIDFEESSPRFNVSETHWAK
TWLLHPDAPKVQKPEVIQDIHGKILKKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1121997 EL147_RS03970 WP_007893602.1 829157..830227(-) (amiE) [Streptococcus pseudoporcinus strain NCTC13786]
ATGGAAGAAAATAAAGAAATAATATTAAGTGCAAAAAATGTCGTTGTTGAATTTGATGTTCGTGATCGCACCTTAACTGC
TATTCGTGATATTTCAATTGATCTGTATGAAGGCGATGTCCTAGCAGTTGTTGGGGAATCTGGAAGTGGAAAGTCAGTTT
TGACAAAAACATTTACGGGAATGTTAGAATCTAATGGTAGAGTGGCCTCTGGAAGTATTGATTACCGTGGGCAAGAGCTA
ACGAAACTCAAAAATCATAAAGACTGGGAAGGTATCCGCGGAGCAAAAATAGCGACAATTTTCCAAGATCCTATGACAAG
TCTTGACCCGATTCAAACAATCGGAAGTCAAATCACTGAAGTGATTATCAAACATCAGAAGAAATCTCATTCTGAAGCTA
AAAAAATGGCTATTGATTATATGACTAAGGTTGGTATTCCTAATCCTGATAAACGTTTTAAAGAGTACCCATTTCAATAT
TCTGGAGGTATGAGGCAACGGATTGTTATAGCAATTGCGTTAGCCTGTCGCCCAGATATTCTGATTTGTGATGAGCCAAC
TACAGCTTTAGATGTTACTATTCAAGCTCAGATTATTGAATTGTTAAAGTCACTTCAAAAGGAATATCAATTTACCATTA
TTTTTATTACTCACGATCTTGGTGTCGTTGCAAGTATAGCGACTAATGTGGCGGTCATGTATGCAGGAGAAATCATTGAG
TATGGAAGGGTAGAAGATATCTTCTATGACCCAAGGCACCCTTATACATGGAGTCTCCTATCAAGCTTGCCACAATTAGC
TGATGATAAAGGTGTTTTATTCTCTATTCCAGGGACACCACCGTCACTGTACAAGCCGATTGTTGGCGACGCTTTTGCGC
CTCGTTCACGCTATGCCATGAAAATTGATTTTGAAGAAAGCTCTCCGCGTTTTAACGTGAGTGAAACGCATTGGGCCAAA
ACATGGTTACTCCACCCGGATGCACCGAAGGTTCAAAAACCTGAGGTCATTCAAGACATTCATGGAAAAATTTTAAAGAA
GCAAATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K919

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

79.722

100

0.806
  amiE Streptococcus thermophilus LMG 18311

78.333

100

0.792
  amiE Streptococcus thermophilus LMD-9

78.333

100

0.792
  oppD Streptococcus mutans UA159

56.587

93.82

0.531

Multiple sequence alignment