Detailed information NTG1121996

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL147_RS03965
• Genome accession: NZ_LR134341
• Coordinates: 828241..829164 (-)
• Length: 307 a.a.
• NCBI ID: WP_007893669.1
• Uniprot ID: G5K918
• Organism: Streptococcus pseudoporcinus strain NCTC13786
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 823241..834164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL147_RS03965 (NCTC13786_00793)	amiF	828241..829164 (-)	924	WP_007893669.1	ABC transporter ATP-binding protein	Regulator
EL147_RS03970 (NCTC13786_00794)	amiE	829157..830227 (-)	1071	WP_007893602.1	ABC transporter ATP-binding protein	Regulator
EL147_RS03975 (NCTC13786_00795)	amiD	830236..831162 (-)	927	WP_007893576.1	oligopeptide ABC transporter permease OppC	Regulator
EL147_RS03980 (NCTC13786_00796)	amiC	831162..832661 (-)	1500	WP_007893616.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34567.00 Da
• Isoelectric Point: 7.5577

>NTDB_id=1121996 EL147_RS03965 WP_007893669.1 828241..829164(-) (amiF) [Streptococcus pseudoporcinus strain NCTC13786]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSKGDILYDGKIINGKKSKS
EANALIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERQEKIKNMMSEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKMQKEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPIHPYTKSLLSAVPIPDPILERKKKLIVYSVDQHDYSVDKPKMVEIKPGHFVWANKAEVAEYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1121996 EL147_RS03965 WP_007893669.1 828241..829164(-) (amiF) [Streptococcus pseudoporcinus strain NCTC13786]
ATGTCTGAGAAATTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTAGCCGTCAAAAA
TGCTAACTTCTTTATTAACAAAGGAGAGACTTTTTCACTTGTTGGAGAATCAGGATCTGGTAAAACCACAATTGGGCGTG
CTATCATTGGTTTGAATGAGACAAGCAAAGGGGATATTCTTTATGACGGAAAAATTATAAATGGAAAAAAATCAAAATCT
GAAGCCAACGCATTAATTCGTAAGATTCAGATGATTTTCCAAGACCCAGCTGCTAGTTTAAATGAGCGAGCAACAGTTGA
TTATATCATTTCAGAAGGTCTTTATAACTTTAATCTCTTTAAAACTGAAGAGGAACGACAAGAAAAGATAAAAAATATGA
TGTCAGAAGTCGGTCTGTTATCGGAACATCTGACGCGGTATCCCCATGAATTTTCTGGTGGGCAACGCCAGCGTATTGGG
ATCGCACGTGCCTTAGTTATGGACCCTGAGTTTGTCATTGCAGATGAACCTATATCGGCTCTTGATGTCTCTGTTCGGGC
TCAAGTTTTAAACCTTTTGAAAAAGATGCAAAAAGAAAAAGGACTAACCTATCTCTTTATTGCTCATGACTTATCCGTTG
TACGTTTTATATCTGACCGAATAGCAGTTATTCATAAAGGGGTCATTGTGGAAGTTGCTGAAACAGAAGAACTCTTCATT
AATCCGATTCACCCTTATACCAAGTCTCTTTTATCAGCGGTACCAATCCCTGATCCGATATTGGAGAGAAAGAAAAAATT
AATTGTCTACTCAGTTGACCAGCACGACTATTCAGTTGACAAACCTAAGATGGTTGAAATAAAACCAGGGCATTTTGTAT
GGGCTAATAAAGCTGAAGTTGCTGAATATCAAAAAGAACTATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

3D structure

• AlphaFold DB: G5K918

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.333	99.674	0.831
amiF	Streptococcus thermophilus LMD-9	83.007	99.674	0.827
amiF	Streptococcus salivarius strain HSISS4	83.007	99.674	0.827