Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL147_RS03980 Genome accession   NZ_LR134341
Coordinates   831162..832661 (-) Length   499 a.a.
NCBI ID   WP_007893616.1    Uniprot ID   A0A4U9XI74
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 826162..837661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS03965 (NCTC13786_00793) amiF 828241..829164 (-) 924 WP_007893669.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03970 (NCTC13786_00794) amiE 829157..830227 (-) 1071 WP_007893602.1 ABC transporter ATP-binding protein Regulator
  EL147_RS03975 (NCTC13786_00795) amiD 830236..831162 (-) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  EL147_RS03980 (NCTC13786_00796) amiC 831162..832661 (-) 1500 WP_007893616.1 ABC transporter permease Regulator
  EL147_RS03985 (NCTC13786_00797) amiA3 832731..834713 (-) 1983 WP_007893619.1 peptide ABC transporter substrate-binding protein Regulator
  EL147_RS03990 (NCTC13786_00798) pbp3 835038..836276 (+) 1239 WP_007893667.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL147_RS03995 (NCTC13786_00799) pbp3 836323..837537 (+) 1215 WP_007893621.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56042.76 Da        Isoelectric Point: 10.1407

>NTDB_id=1121999 EL147_RS03980 WP_007893616.1 831162..832661(-) (amiC) [Streptococcus pseudoporcinus strain NCTC13786]
MKKYIIERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKENYRNTIFERMGYISYYNSKELEAKAE
KIDKSVSVEPSKANQKIYQAYIKSIGNGWKLKRFEESKKFYAVRNIPIYERVWNFFSHLIVIDHPWVIKDKSNPNLARYI
RPEIDPAVGPALVGSGTKHKYMLYFNKQFPFVHQNFIGFNLGISYPTYANIPVIQVITQEQGRTLSKEVTFPNGTKKFSP
INIYSRTYKSPSKADVRDRMNFGKDDPYTATENNHAEPSMISNSFIIGMIGVLLSYIFGLPIGMLMAYYKDGIFDRFSTG
ATTFMLALPSIALIYIVRFIGSMVGLPDTFPLLGASDPKSYVLPALILGILGTPGNVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAVVATIAGATLTETVFAFPGMGKMLIDAIKVANNAMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1121999 EL147_RS03980 WP_007893616.1 831162..832661(-) (amiC) [Streptococcus pseudoporcinus strain NCTC13786]
ATGAAAAAGTATATTATTGAGCGCATCTTGAGGTCCTTAATATCAATTTTGTTGGTAACTACACTGACTTATGTCATCGT
TTTTACACTTGTTCCAACAAATTTGATTTTTAAACAAGATCCTAATTATAACAAGATGGTGACGACACCAGATAAAAAAG
AAAATTATCGAAATACGATTTTCGAGCGTATGGGCTATATTTCTTACTACAATAGTAAAGAATTAGAAGCTAAGGCTGAG
AAAATAGATAAATCTGTTAGCGTTGAACCATCAAAGGCTAATCAAAAAATTTATCAGGCCTATATCAAATCCATCGGAAA
TGGTTGGAAATTGAAACGTTTTGAAGAAAGTAAAAAATTCTATGCAGTCCGTAACATACCAATTTATGAGCGAGTGTGGA
ATTTTTTCAGTCACTTGATAGTAATTGATCACCCGTGGGTAATTAAAGATAAATCAAATCCGAACCTTGCTCGCTATATT
CGCCCAGAAATAGATCCAGCAGTAGGCCCAGCTTTGGTTGGTTCAGGGACTAAACATAAGTATATGTTATACTTCAATAA
ACAATTTCCCTTTGTTCACCAAAACTTTATTGGCTTTAATTTGGGGATTTCCTATCCAACTTACGCTAATATTCCTGTTA
TTCAAGTTATTACACAAGAACAAGGGCGCACGTTATCTAAAGAAGTAACCTTCCCAAATGGGACTAAGAAGTTTTCACCA
ATTAATATCTACTCTCGCACTTACAAGTCACCTAGTAAGGCAGATGTCAGGGATCGAATGAACTTTGGAAAAGATGACCC
ATACACTGCAACTGAAAACAACCATGCAGAGCCATCTATGATAAGTAATTCATTCATTATTGGTATGATTGGTGTTTTAC
TATCGTATATCTTTGGCCTTCCGATTGGTATGTTGATGGCTTATTATAAAGACGGCATATTTGATCGTTTCTCTACTGGT
GCCACAACATTTATGTTAGCTCTTCCAAGCATTGCCTTGATATATATTGTTCGTTTCATAGGCTCAATGGTTGGCCTTCC
TGATACGTTTCCATTGTTAGGTGCAAGCGATCCTAAATCTTACGTCTTGCCAGCTCTAATTTTGGGAATTCTAGGAACAC
CAGGAAATGTCGTCTGGTTCCGTCGCTACTTGGTAGACTTACAAGGTAGTGATTTTGTTCGATTTGCGCGTGCTAAAGGA
TTAACGGAAGCTGAAATATCAAAAAATCACTTATTTAAACAAGCTATGGTTCCCATTGTCAATGGAATTCCACAGGCAGT
AGTTGCAACTATCGCAGGAGCTACCTTAACTGAAACTGTTTTTGCTTTTCCAGGAATGGGTAAAATGCTGATTGATGCTA
TTAAAGTAGCTAATAATGCAATGGTTGTTGGCCTTGTCTTTATCTTCGCAGTTCTTTCCATTTTAGCATTGCTAGCTGGT
GACATCCTAATGACCATACTTGATCCACGTATCAAATTATCTAGTAAAGGAGGAAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9XI74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.525

100

0.625
  amiC Streptococcus thermophilus LMG 18311

62.325

100

0.623
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619

Multiple sequence alignment