Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL140_RS01310 Genome accession   NZ_LR134336
Coordinates   236788..238767 (+) Length   659 a.a.
NCBI ID   WP_000749706.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 231788..243767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS01280 - 232235..232465 (+) 231 WP_002874202.1 DUF1146 family protein -
  EL140_RS01285 (NCTC11427_00247) murA 232489..233772 (+) 1284 WP_000411908.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EL140_RS01290 (NCTC11427_00248) - 233759..233953 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  EL140_RS01295 (NCTC11427_00249) endA 233994..234818 (+) 825 WP_000359002.1 DNA/RNA non-specific endonuclease Machinery gene
  EL140_RS01300 (NCTC11427_00250) - 234954..236285 (+) 1332 WP_000390016.1 hemolysin family protein -
  EL140_RS01310 (NCTC11427_00252) amiA 236788..238767 (+) 1980 WP_000749706.1 peptide ABC transporter substrate-binding protein Regulator
  EL140_RS01315 (NCTC11427_00253) amiC 238834..240330 (+) 1497 WP_000759884.1 ABC transporter permease Regulator
  EL140_RS01320 (NCTC11427_00254) amiD 240330..241256 (+) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  EL140_RS01325 (NCTC11427_00255) amiE 241265..242332 (+) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  EL140_RS01330 (NCTC11427_00256) amiF 242343..243272 (+) 930 WP_001291310.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72666.78 Da        Isoelectric Point: 4.8246

>NTDB_id=1121825 EL140_RS01310 WP_000749706.1 236788..238767(+) (amiA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKKSRVFVAAGIALLATGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSEALYLAENSVKGLSDYLSGNSKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHLDKVTLAFYDGSDQESLERNFTSGAYSYARLFPTSSNYSKVAESYKENIYYNPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPTFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKAYIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LNNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1121825 EL140_RS01310 WP_000749706.1 236788..238767(+) (amiA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAAAAAAGTAGAGTATTTGTCGCAGCAGGAATTGCCCTATTAGCAACTGGCGTTTTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGTTATGTTTATACAGCTGATCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTTGCCACTTCAAATGGTATCGATGGTCTTTTCACAAACGATAAGTATGGGAACCTAGTTCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGATGGTTTGACTTATACTTACAAGATTCGTAAAGGAGTCAAATGGATGAC
ATCTGACGGAGAAGAGTACGCAGAAGTTACTGCCAAAGACTTTGTAAATGGTTTGAAACACGCAGCTGATAACAAGTCAG
AAGCTCTTTACCTAGCAGAAAATTCTGTTAAAGGTTTGTCTGATTATTTATCAGGCAATTCAAAAGATTTTTCTTCAGTA
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAACCAACCAGAACCATACTGGAACTCTAAGATGGCTTA
TTCAATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGAGCTGACTTTGCTAAAGCAACAGACCCTACATCCT
TGCTTTACAATGGTCCATTCTTGCTGAAAGGGTTGACTGCTAAGTCTTCTATCGAGTTCGCTAAAAATGAAAACTACTGG
GACAAAGACAATGTTCATCTCGATAAAGTTACTCTTGCTTTCTATGATGGATCAGACCAAGAGTCGCTTGAGCGTAACTT
TACAAGCGGAGCTTATAGCTATGCCCGTCTCTTCCCTACAAGTTCAAACTACTCTAAGGTAGCAGAAAGCTACAAGGAAA
ATATCTACTACAATCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGATACAAATACACTTCT
AAGACAACTGACGAGGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAAGATTTCCGTCAGGCTTTGAACTTTGCCTT
TGACCGTACGTCTTACTCAGCACAAATTAATGGTAAAGAAGGCGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCTA
CCTTTGTCTCAGCAGGCGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTATGGTGATGAATGGAAGAAC
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCTAAAGCAGAATTTGCCAAAGCTAAAACTGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACTTCTAAAGCCTATATTGCACGTATCC
AATCCTTCAAACAATCTGTTGAAACAGTACTTGGTGAAGGCAACGTAGTCATTGATATCCAACAAATTTCTAAAGATGAG
TTGAACAACATCACTTACTACGCAGCTAGCGCAGCAGCAGAAGATTGGGATCTTTCAGGTGCTGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAGGAAACCAAC
GACTTGAATGTTCGTTATGAAAAATATGCGGCTGCCCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTACCATTCACAGCATCTTACAGTCAATCTGGAGATAAGGGATCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAACCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675

Multiple sequence alignment