Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL140_RS01315 Genome accession   NZ_LR134336
Coordinates   238834..240330 (+) Length   498 a.a.
NCBI ID   WP_000759884.1    Uniprot ID   A0A0F2CWP0
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 233834..245330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS01295 (NCTC11427_00249) endA 233994..234818 (+) 825 WP_000359002.1 DNA/RNA non-specific endonuclease Machinery gene
  EL140_RS01300 (NCTC11427_00250) - 234954..236285 (+) 1332 WP_000390016.1 hemolysin family protein -
  EL140_RS01310 (NCTC11427_00252) amiA 236788..238767 (+) 1980 WP_000749706.1 peptide ABC transporter substrate-binding protein Regulator
  EL140_RS01315 (NCTC11427_00253) amiC 238834..240330 (+) 1497 WP_000759884.1 ABC transporter permease Regulator
  EL140_RS01320 (NCTC11427_00254) amiD 240330..241256 (+) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  EL140_RS01325 (NCTC11427_00255) amiE 241265..242332 (+) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  EL140_RS01330 (NCTC11427_00256) amiF 242343..243272 (+) 930 WP_001291310.1 ATP-binding cassette domain-containing protein Regulator
  EL140_RS01335 (NCTC11427_00257) - 243361..244800 (-) 1440 WP_001043430.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55671.05 Da        Isoelectric Point: 9.2397

>NTDB_id=1121826 EL140_RS01315 WP_000759884.1 238834..240330(+) (amiC) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TIDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLIDIDHTNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNVNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1121826 EL140_RS01315 WP_000759884.1 238834..240330(+) (amiC) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACATTGACCTACACAATTAT
CTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCTAGC
ACGATAGACTCATCTGTAACAGTAGATGCCAATGATACCAACAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACGCTAGGTGTATTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATGCCAACTTGATTGATATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGCTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAGTATCTTTTGTATTTCAACAA
CCAATTCCCATTTGTACACCAAAACTTTGTAAACGTTAACTTAGGTGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACCCAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCTGTA
GATATCTACTCTCGTACCTACAAATCACCAAGTCAAGCAGACGCACGTGAGGTGGCAAACTATGGTAAGGACGATCCTTA
CACGGCTACAGAAAGCAATTACCAATATCCATCTATGATTGCAAGTTCAGCTGTTGCTGGTTTGATTGGTTTGATTATCT
CGTATGCTATCGCTATTCCACTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGACAGCTTCTCGACAGGTGCT
CTGACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTATATATTGTGCGCTTGATTGGATCATCTATCGGTCTGCCAGA
CTCATTCCCTATCTTGGGGGCTGGAGATTGGCGTTCTTATGTCCTGCCAGCAGTTATTTTAGGTCTATTGGGTGCTCCAA
GTACGGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAAGACTTCGTACGTTTTGCTCGCGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCCAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACTATGCTTGATCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CWP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment