Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL140_RS01320 Genome accession   NZ_LR134336
Coordinates   240330..241256 (+) Length   308 a.a.
NCBI ID   WP_000103935.1    Uniprot ID   A0A7H9FEK4
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 235330..246256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS01310 (NCTC11427_00252) amiA 236788..238767 (+) 1980 WP_000749706.1 peptide ABC transporter substrate-binding protein Regulator
  EL140_RS01315 (NCTC11427_00253) amiC 238834..240330 (+) 1497 WP_000759884.1 ABC transporter permease Regulator
  EL140_RS01320 (NCTC11427_00254) amiD 240330..241256 (+) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  EL140_RS01325 (NCTC11427_00255) amiE 241265..242332 (+) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  EL140_RS01330 (NCTC11427_00256) amiF 242343..243272 (+) 930 WP_001291310.1 ATP-binding cassette domain-containing protein Regulator
  EL140_RS01335 (NCTC11427_00257) - 243361..244800 (-) 1440 WP_001043430.1 TrkH family potassium uptake protein -
  EL140_RS01340 (NCTC11427_00258) trkA 244804..246153 (-) 1350 WP_000706809.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34575.62 Da        Isoelectric Point: 9.3349

>NTDB_id=1121827 EL140_RS01320 WP_000103935.1 240330..241256(+) (amiD) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MSTIGKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1121827 EL140_RS01320 WP_000103935.1 240330..241256(+) (amiD) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGTCAACAATCGGAAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTTAGTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCAACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATCTGGGGAA
TTTCAAAATCTGTAGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCCCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCATTGACAACCTTGATTTTGGTATCTCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9FEK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment