Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL140_RS01330 Genome accession   NZ_LR134336
Coordinates   242343..243272 (+) Length   309 a.a.
NCBI ID   WP_001291310.1    Uniprot ID   K0ZXN4
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 237343..248272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS01315 (NCTC11427_00253) amiC 238834..240330 (+) 1497 WP_000759884.1 ABC transporter permease Regulator
  EL140_RS01320 (NCTC11427_00254) amiD 240330..241256 (+) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  EL140_RS01325 (NCTC11427_00255) amiE 241265..242332 (+) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  EL140_RS01330 (NCTC11427_00256) amiF 242343..243272 (+) 930 WP_001291310.1 ATP-binding cassette domain-containing protein Regulator
  EL140_RS01335 (NCTC11427_00257) - 243361..244800 (-) 1440 WP_001043430.1 TrkH family potassium uptake protein -
  EL140_RS01340 (NCTC11427_00258) trkA 244804..246153 (-) 1350 WP_000706809.1 Trk system potassium transporter TrkA -
  EL140_RS01350 (NCTC11427_00260) - 246554..247057 (+) 504 WP_000181368.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  EL140_RS01355 (NCTC11427_00262) - 247470..248033 (+) 564 WP_000185813.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35081.31 Da        Isoelectric Point: 7.0424

>NTDB_id=1121829 EL140_RS01330 WP_001291310.1 242343..243272(+) (amiF) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKKVLKD

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1121829 EL140_RS01330 WP_001291310.1 242343..243272(+) (amiF) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACATTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTTTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAGATTAATGGGAAAAAATCTCATAAA
GAATCATCAGACTTGATTCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCGAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGCCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCCGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGATAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCAGAACTTGCTCGTTACAAGAAAGTTCTTAAAGATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0ZXN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

86.23

98.706

0.851
  amiF Streptococcus thermophilus LMG 18311

85.246

98.706

0.841
  amiF Streptococcus thermophilus LMD-9

84.918

98.706

0.838

Multiple sequence alignment