Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   EL133_RS11255 Genome accession   NZ_LR134323
Coordinates   2141676..2142929 (+) Length   417 a.a.
NCBI ID   WP_196792571.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2136676..2147929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS11230 (NCTC13766_02314) - 2137859..2140468 (+) 2610 WP_006739110.1 YfhO family protein -
  EL133_RS11250 (NCTC13766_02318) rlmH 2141015..2141494 (-) 480 WP_006739842.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL133_RS11255 (NCTC13766_02319) htrA 2141676..2142929 (+) 1254 WP_196792571.1 S1C family serine protease Regulator
  EL133_RS11260 (NCTC13766_02320) spo0J 2142999..2143766 (+) 768 WP_006739949.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 417 a.a.        Molecular weight: 43664.82 Da        Isoelectric Point: 9.1909

>NTDB_id=1121556 EL133_RS11255 WP_196792571.1 2141676..2142929(+) (htrA) [Streptococcus urinalis strain NCTC13766]
MTHGGRKGLNKFKSGSKTLLKLLILIIAGFVGGMIATFTLNSSSNSITSKGNVTTSKVAYENTTNTTKAVKKVQNAVVSV
INYKKQSSTDNAYSQFFGNSDSNSNSNDNEMSIYSEGSGVIYKKDGNSAYLVTNNHVIDGADRIEIQLADGSKVVGKLVG
SDTYSDIAVVKISSSKVKSVAEFANSTKLNVGERAIAIGSPLGTEYANSVTEGIVSSLSRTVTLKNESGETVSTNAIQTD
AAINPGNSGGPLINIEGQVIGINSSKISSTSSTSSGDSVEGMGFAIPSNDVVKIINQLEKNGEVTRPALGISMASLSDLS
TSALSQLNIPSSVTNGIVVASTQSGMPADGKLKQYDVITAIDGESVSSTSDLQSVLYGHSINDTIKVTFYRKSEKKTVEI
KLTKTTKDLSSKEQTNP

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1121556 EL133_RS11255 WP_196792571.1 2141676..2142929(+) (htrA) [Streptococcus urinalis strain NCTC13766]
ATGACTCATGGAGGTAGGAAAGGCTTGAATAAATTTAAATCAGGTTCGAAAACATTATTAAAATTACTTATTTTAATAAT
AGCAGGTTTTGTAGGTGGAATGATTGCAACTTTTACACTTAATTCCTCATCAAATTCAATTACAAGTAAAGGAAATGTAA
CAACAAGTAAAGTTGCTTACGAAAATACAACAAATACAACCAAGGCAGTTAAAAAAGTTCAGAATGCTGTTGTATCTGTT
ATTAATTATAAAAAACAATCCAGTACTGACAACGCTTATAGTCAATTCTTTGGTAATTCTGATTCTAATTCCAATTCAAA
TGATAACGAAATGTCAATTTATAGCGAAGGTTCAGGAGTTATTTATAAAAAGGATGGTAACTCAGCTTATTTAGTAACCA
ATAACCACGTTATCGATGGAGCAGATCGCATTGAGATTCAACTAGCTGATGGCAGTAAAGTTGTTGGTAAGCTCGTTGGT
TCTGATACTTATTCTGATATAGCTGTCGTAAAAATTTCTTCATCCAAAGTGAAATCCGTTGCAGAATTTGCTAATTCAAC
AAAATTAAATGTTGGTGAAAGAGCTATTGCTATTGGTAGTCCTTTAGGAACAGAATATGCAAATTCAGTTACAGAAGGTA
TTGTTTCAAGTTTAAGTCGTACTGTCACGCTTAAAAATGAATCTGGTGAAACAGTTTCTACTAATGCTATTCAAACCGAT
GCTGCTATTAATCCTGGTAATTCTGGTGGACCACTTATTAATATTGAAGGTCAAGTTATCGGTATTAATTCAAGTAAAAT
TTCATCAACTTCATCAACTTCAAGTGGTGATAGTGTCGAAGGTATGGGATTTGCCATTCCATCTAATGATGTCGTGAAGA
TCATTAATCAACTTGAAAAGAATGGTGAAGTGACGCGTCCAGCTTTAGGTATTTCAATGGCTAGTCTAAGTGATCTTTCA
ACTAGTGCTTTAAGTCAATTGAATATTCCAAGTAGTGTCACAAATGGTATTGTTGTTGCATCAACTCAATCAGGAATGCC
TGCCGATGGAAAACTTAAACAATATGATGTTATTACTGCTATTGATGGTGAATCTGTTTCATCAACTAGTGATTTGCAAA
GTGTTCTTTATGGTCATAGTATTAATGACACCATCAAAGTTACTTTCTATCGTAAATCTGAAAAGAAAACTGTTGAAATT
AAATTAACAAAGACAACTAAAGACTTATCAAGTAAAGAACAAACTAATCCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

66.416

95.683

0.635

  htrA Streptococcus gordonii str. Challis substr. CH1

59

95.923

0.566

  htrA Streptococcus mitis NCTC 12261

57.143

97.362

0.556

  htrA Streptococcus pneumoniae TIGR4

56.897

97.362

0.554

  htrA Streptococcus pneumoniae D39

56.897

97.362

0.554

  htrA Streptococcus pneumoniae Rx1

56.897

97.362

0.554

  htrA Streptococcus pneumoniae R6

56.897

97.362

0.554


Multiple sequence alignment