Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL133_RS01715 Genome accession   NZ_LR134323
Coordinates   335768..337747 (+) Length   659 a.a.
NCBI ID   WP_006738892.1    Uniprot ID   G5KC64
Organism   Streptococcus urinalis strain NCTC13766     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 330768..342747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS01695 (NCTC13766_00339) sufU 330997..331443 (+) 447 WP_006738634.1 Fe-S cluster assembly sulfur transfer protein SufU -
  EL133_RS01700 (NCTC13766_00340) sufB 331484..332899 (+) 1416 WP_006739231.1 Fe-S cluster assembly protein SufB -
  EL133_RS01705 (NCTC13766_00341) pbp3 332944..334152 (-) 1209 WP_006739584.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL133_RS01710 (NCTC13766_00342) pbp3 334234..335484 (-) 1251 WP_320153871.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL133_RS01715 (NCTC13766_00343) amiA 335768..337747 (+) 1980 WP_006738892.1 peptide ABC transporter substrate-binding protein Regulator
  EL133_RS01720 (NCTC13766_00344) amiC 337815..339314 (+) 1500 WP_006740654.1 ABC transporter permease Regulator
  EL133_RS01725 (NCTC13766_00345) amiD 339314..340240 (+) 927 WP_006739742.1 oligopeptide ABC transporter permease OppC Regulator
  EL133_RS01730 (NCTC13766_00346) amiE 340249..341301 (+) 1053 WP_006739667.1 ABC transporter ATP-binding protein Regulator
  EL133_RS01735 (NCTC13766_00347) amiF 341311..342228 (+) 918 WP_006738829.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73674.31 Da        Isoelectric Point: 9.0461

>NTDB_id=1121513 EL133_RS01715 WP_006738892.1 335768..337747(+) (amiA) [Streptococcus urinalis strain NCTC13766]
MKNKGKWLVVAGISLVSVFALTSCSGHSSKNNTTKTFSYVYTSDPSTLDYILTSKATTSDVTTQGIDGLLENDKYGNLIP
SLAKTWTVSKDGLTYTYKLRDGIKWYTSDGEEYANVTAQDFVTGLKHAADKKSDSLYIVQDSVKGLQEYIDGKTNDFSTV
GVKALDKKTVQYTLKQPESFWNSKLTYGILAPLNAEFLKSKGNDFGKSTDPSSILYNGAFLISALTGKSSIEFTKNKAYW
DSKNVHIDNVQLTYYDGQDQESLFRNFDDGAYSVARLFPTTPSYKTAKKKYGKNITYGQLTGTTYYASFNLNRSSYNHTK
KTNDQQKRDTREAVLNKNFRQSIMFGFDRQKYQAQNVGQDASKIAIRNTLVPSSFVQIGDKTFDQEVEKQLSSYGDQWKN
VKLEDGQDGLYNPQKAKQQLTKAKEELTAKGISFPIHLDLPVNQTDTLGIQQAQSMKQSIEASLGAENVQIDISQLQDDT
YQSITYLAETTNVQDWDISTASGWGADYEDPSSYLDIFNPDIPNSQTKNIGITPGQDKDIVKAAGFSDFANLVSDASLIR
DNVTKRYEAYAKAQAYLTDSAVYIPTIALGGSPRVSKVVPFTVPFSWSGDKGERVYKYVKLQEKPVTAKQYETAFKEWKK
NKIKSNAKYMKSLSDHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1121513 EL133_RS01715 WP_006738892.1 335768..337747(+) (amiA) [Streptococcus urinalis strain NCTC13766]
ATGAAAAATAAAGGTAAATGGTTAGTAGTAGCTGGGATCAGCCTAGTTTCAGTCTTTGCACTAACAAGTTGTAGCGGTCA
CTCATCAAAAAATAATACGACAAAGACATTTAGTTATGTCTATACATCAGATCCCTCAACATTAGATTATATTTTAACAA
GTAAGGCAACAACAAGTGATGTCACAACTCAAGGAATTGATGGATTATTAGAAAATGATAAATATGGGAACCTTATTCCA
TCATTAGCGAAGACTTGGACTGTTTCTAAAGATGGTCTAACTTATACCTATAAACTACGTGATGGCATAAAATGGTATAC
ATCAGATGGTGAAGAATACGCAAATGTTACCGCACAAGATTTTGTTACAGGCTTAAAACATGCTGCTGATAAAAAGTCAG
ATTCCTTATATATTGTGCAAGATTCTGTTAAAGGATTGCAAGAATATATTGATGGAAAAACAAATGATTTCTCTACAGTT
GGCGTTAAAGCTTTAGATAAAAAGACAGTTCAATATACCTTAAAACAACCAGAATCTTTTTGGAATTCTAAGTTGACATA
TGGAATATTGGCACCCCTCAATGCTGAATTTTTGAAATCAAAAGGAAATGATTTTGGTAAATCAACCGATCCTTCCTCAA
TTCTATATAACGGCGCATTTTTGATTTCAGCACTTACAGGAAAATCTTCAATAGAGTTTACAAAGAACAAAGCTTATTGG
GATTCCAAAAATGTCCATATTGATAATGTTCAATTAACTTATTATGATGGTCAAGACCAAGAATCTTTATTTAGAAATTT
TGATGATGGTGCCTATAGTGTTGCTAGACTATTTCCAACAACACCATCTTATAAAACGGCTAAAAAGAAATACGGCAAGA
ATATTACCTACGGTCAATTAACTGGAACTACATACTATGCGTCATTTAATTTGAATCGTAGCAGTTATAATCATACAAAA
AAAACAAATGATCAACAAAAGAGAGACACTCGAGAAGCAGTCTTAAATAAGAATTTTAGACAATCTATCATGTTTGGTTT
TGATCGTCAAAAATACCAAGCCCAAAATGTTGGTCAAGATGCTTCTAAGATTGCAATCCGAAATACCTTAGTTCCGTCTT
CATTTGTTCAAATAGGAGATAAGACATTTGATCAAGAAGTTGAAAAGCAATTATCGTCTTATGGTGACCAATGGAAAAAT
GTAAAACTAGAAGATGGTCAAGATGGTCTTTATAATCCCCAAAAAGCTAAACAGCAATTGACAAAAGCTAAAGAAGAATT
AACAGCTAAAGGTATCAGTTTCCCAATTCATTTGGATTTACCAGTTAATCAAACGGATACTTTAGGGATTCAACAAGCCC
AATCAATGAAACAATCTATTGAAGCTTCATTAGGAGCTGAGAATGTTCAAATTGATATCTCTCAACTACAGGACGATACT
TACCAAAGTATCACTTATTTAGCCGAAACAACCAATGTTCAAGATTGGGACATTTCAACAGCTTCTGGATGGGGTGCTGA
CTATGAAGATCCTTCATCTTATCTGGATATCTTTAATCCAGATATTCCAAATTCTCAAACTAAAAATATTGGAATCACTC
CTGGACAAGATAAAGATATCGTAAAAGCGGCAGGATTTAGTGATTTTGCAAATCTAGTTTCAGATGCTAGTTTGATAAGA
GATAATGTCACAAAACGTTATGAGGCATATGCAAAAGCGCAAGCCTATCTAACAGATTCAGCTGTTTATATTCCAACTAT
AGCATTAGGTGGTTCACCAAGGGTTTCTAAAGTTGTACCGTTCACAGTACCATTTTCATGGTCAGGTGATAAAGGTGAAC
GTGTTTATAAATATGTAAAACTTCAAGAAAAACCTGTTACAGCAAAACAATATGAAACAGCATTCAAAGAGTGGAAGAAA
AATAAAATAAAATCTAACGCCAAATACATGAAATCACTTTCTGATCACGTGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KC64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.03

100

0.531
  amiA3 Streptococcus thermophilus LMG 18311

52.648

100

0.528
  amiA3 Streptococcus thermophilus LMD-9

52.648

100

0.528

Multiple sequence alignment