Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EL133_RS01720 Genome accession   NZ_LR134323
Coordinates   337815..339314 (+) Length   499 a.a.
NCBI ID   WP_006740654.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 332815..344314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS01705 (NCTC13766_00341) pbp3 332944..334152 (-) 1209 WP_006739584.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL133_RS01710 (NCTC13766_00342) pbp3 334234..335484 (-) 1251 WP_320153871.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EL133_RS01715 (NCTC13766_00343) amiA 335768..337747 (+) 1980 WP_006738892.1 peptide ABC transporter substrate-binding protein Regulator
  EL133_RS01720 (NCTC13766_00344) amiC 337815..339314 (+) 1500 WP_006740654.1 ABC transporter permease Regulator
  EL133_RS01725 (NCTC13766_00345) amiD 339314..340240 (+) 927 WP_006739742.1 oligopeptide ABC transporter permease OppC Regulator
  EL133_RS01730 (NCTC13766_00346) amiE 340249..341301 (+) 1053 WP_006739667.1 ABC transporter ATP-binding protein Regulator
  EL133_RS01735 (NCTC13766_00347) amiF 341311..342228 (+) 918 WP_006738829.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56148.87 Da        Isoelectric Point: 10.3313

>NTDB_id=1121514 EL133_RS01720 WP_006740654.1 337815..339314(+) (amiC) [Streptococcus urinalis strain NCTC13766]
MKKYIFERSLRSLISIFLVTTLTYIIVFTLVPTSLIFRQDPNYNKMVTTIDKKTSYQNTVFQRMGYIEFYDSKELQQEAS
KQFKNVTTNPSASNKKYYQAFVAKLGSGWRLKQYKESKAYYAFRKIPIHERVWHFFRGLIVLDHPWKIKDPENPNLKRYI
TLENDKAVGPALVGSGTKHRYLIYFTKHFPFVHQNFITMNLGISYPTYANIPVTQVISQGQGRTQTREVTFPTGITKLSS
IDIYSRTYKNPKNMDSRDKLNFGANDAYTATLNHYAEPSMISNSFKIGIIGVILSYLLGLPIGMLMAHFKDGIFDRGMTA
LTTFMLALPSIALIYIIRFMGSLVGLPDTFPLLGSGDPKSYVLPTIILGILGTPGTVIWFRRFLVDLQGSDFVRFARAKG
LSEAEISKKHLFKQAMVPIVNGIPQAIVATIAGATLTETVFAFPGMGKMLIDSIKAANNTMVVGLVFIFSVLSILGLLCG
DILMTILDPRIKLSNKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1121514 EL133_RS01720 WP_006740654.1 337815..339314(+) (amiC) [Streptococcus urinalis strain NCTC13766]
ATGAAAAAATATATATTTGAACGCAGCTTAAGATCACTAATATCAATCTTTTTAGTAACTACTTTGACCTATATAATTGT
CTTTACTTTGGTTCCAACCAGTCTCATTTTTAGACAAGATCCAAACTACAATAAAATGGTAACGACTATTGATAAAAAAA
CCAGTTATCAAAACACCGTCTTTCAACGAATGGGTTATATTGAATTTTATGATTCAAAAGAATTACAACAAGAGGCATCT
AAGCAATTTAAAAATGTCACAACTAACCCATCTGCAAGTAATAAAAAGTATTATCAAGCTTTTGTAGCTAAGTTAGGTAG
TGGTTGGAGATTAAAACAGTACAAAGAAAGTAAAGCTTATTATGCATTTCGTAAAATTCCAATTCATGAAAGAGTTTGGC
ATTTCTTTAGAGGTTTGATTGTCCTTGATCACCCTTGGAAAATAAAAGATCCTGAGAATCCTAACTTAAAGAGATACATA
ACATTAGAAAATGATAAAGCTGTAGGGCCTGCATTAGTTGGTTCTGGGACAAAACATCGTTATCTCATTTATTTTACAAA
GCATTTTCCATTTGTTCATCAGAATTTTATAACGATGAATCTTGGTATTTCTTATCCAACTTATGCCAATATTCCTGTCA
CACAAGTCATTTCCCAAGGACAAGGCCGTACGCAAACACGAGAAGTTACGTTCCCAACAGGAATTACAAAATTATCATCT
ATAGATATTTATTCAAGAACATACAAAAATCCGAAAAATATGGATAGTAGGGATAAACTTAATTTTGGAGCAAATGATGC
CTATACAGCAACTTTAAATCATTATGCTGAACCTTCGATGATTTCAAACTCATTCAAGATTGGAATTATTGGTGTTATCT
TATCCTATCTTCTGGGACTTCCTATTGGAATGCTAATGGCACATTTTAAAGATGGCATTTTTGATAGGGGAATGACAGCA
TTAACAACGTTTATGTTAGCATTACCAAGTATAGCATTGATTTATATTATTCGATTTATGGGCTCTCTTGTTGGTTTACC
AGATACATTTCCACTGTTAGGTTCTGGAGATCCAAAATCTTATGTTTTACCTACAATCATATTAGGAATACTTGGGACAC
CTGGTACGGTTATTTGGTTCCGTAGGTTTCTTGTAGATTTACAAGGAAGTGACTTTGTTCGGTTTGCGCGTGCAAAAGGG
TTATCAGAAGCAGAAATATCTAAAAAACATCTCTTTAAGCAAGCTATGGTACCAATTGTTAATGGTATTCCACAGGCAAT
TGTTGCCACAATTGCAGGTGCAACCTTAACAGAAACTGTTTTTGCCTTTCCAGGTATGGGGAAAATGTTGATTGATTCTA
TTAAAGCTGCAAATAATACGATGGTCGTTGGCTTAGTATTTATCTTTTCTGTTTTGTCAATTTTAGGCCTTTTATGTGGG
GACATTCTGATGACTATTCTTGATCCAAGAATCAAATTATCAAATAAAGGAGGAAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

61.523

100

0.615
  amiC Streptococcus thermophilus LMG 18311

61.523

100

0.615
  amiC Streptococcus thermophilus LMD-9

61.323

100

0.613

Multiple sequence alignment