Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL133_RS01725 Genome accession   NZ_LR134323
Coordinates   339314..340240 (+) Length   308 a.a.
NCBI ID   WP_006739742.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 334314..345240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS01715 (NCTC13766_00343) amiA 335768..337747 (+) 1980 WP_006738892.1 peptide ABC transporter substrate-binding protein Regulator
  EL133_RS01720 (NCTC13766_00344) amiC 337815..339314 (+) 1500 WP_006740654.1 ABC transporter permease Regulator
  EL133_RS01725 (NCTC13766_00345) amiD 339314..340240 (+) 927 WP_006739742.1 oligopeptide ABC transporter permease OppC Regulator
  EL133_RS01730 (NCTC13766_00346) amiE 340249..341301 (+) 1053 WP_006739667.1 ABC transporter ATP-binding protein Regulator
  EL133_RS01735 (NCTC13766_00347) amiF 341311..342228 (+) 918 WP_006738829.1 ATP-binding cassette domain-containing protein Regulator
  EL133_RS01740 (NCTC13766_00348) - 342253..344520 (-) 2268 WP_006739283.1 Xaa-Pro dipeptidyl-peptidase -
  EL133_RS01745 (NCTC13766_00349) - 344534..345193 (-) 660 WP_006739509.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34411.26 Da        Isoelectric Point: 8.5643

>NTDB_id=1121515 EL133_RS01725 WP_006739742.1 339314..340240(+) (amiD) [Streptococcus urinalis strain NCTC13766]
MASIDKSKFSFVELDSFASETIDAPAYSYWKSVFKQFFSKKSTLVMLLILIAIILMSFIYPIFANYDFGDVSNINDFSKR
YISPNAQYWFGTDKNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGLWGVSKTVDKVMLEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYTIRVQILRYRDLEYNLASQTLGTSTLKMVTKNLLPQLVSVIVSLVSLMLPAYIS
SEAFLSYFGLGLPTTEPSLGRLISNYSSNLTTNAYLFWIPLTTLVLVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1121515 EL133_RS01725 WP_006739742.1 339314..340240(+) (amiD) [Streptococcus urinalis strain NCTC13766]
ATGGCTTCTATTGATAAATCAAAATTTTCATTTGTAGAACTAGATAGTTTTGCTTCTGAAACGATTGATGCACCTGCTTA
TTCTTATTGGAAATCTGTTTTTAAACAGTTCTTTTCAAAAAAATCAACACTTGTCATGCTGCTTATTTTGATAGCTATTA
TTTTGATGAGTTTTATTTACCCTATATTTGCTAACTATGATTTTGGTGATGTCAGCAATATCAATGATTTTTCCAAACGC
TATATTTCTCCCAATGCTCAATATTGGTTTGGTACTGATAAAAATGGTCAATCTTTGTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATATTAATTTCAGTGATTGCAACTATTATTAATATGATTATTGGTGTTGTTATAGGTGGTTTATGGGGTG
TCTCTAAAACAGTTGATAAAGTCATGCTGGAAGTGTACAATGTGATTTCGAATTTACCTCAAATGCTGATTATTATTGTT
TTAACTTATTCAATTGGGGCTGGTTTTTGGAATCTTATTTTTGCATTTTGTGTGACAGGATGGATTGGTATCGCCTATAC
TATACGTGTTCAAATACTACGTTATCGTGACTTAGAATATAATTTAGCTAGTCAAACCTTAGGAACCTCAACTTTAAAAA
TGGTTACTAAAAATCTGTTACCACAATTGGTATCTGTTATTGTCTCTTTAGTATCCCTTATGTTACCAGCATACATTTCT
TCAGAAGCCTTTTTATCTTATTTTGGTCTAGGTTTACCAACGACTGAACCTAGTTTAGGACGTCTGATTTCAAATTATTC
TTCGAACTTAACAACAAATGCCTATTTATTTTGGATTCCACTAACCACACTTGTTTTAGTGTCATTACCATTATATATAG
TAGGTCAAAATCTCGCGGATGCTAGTGATCCCAGAACTCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.974

100

0.76
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment